PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G216800.1.p
Common NameGLYMA_17G216800, LOC100820461
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 329aa    MW: 35633.6 Da    PI: 7.2049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G216800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043134156123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C++ F ++  L  H++ H
  Glyma.17G216800.1.p 134 FSCNYCHRKFYSSQALGGHQNAH 156
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-6130161No hitNo description
PROSITE profilePS5015711.406134161IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEGLSMKEPC FCDRPTSSSI FSSSAPPPEA PPSPSTPLQH PHEKKKQLCV EELEEELENK  60
EPKKQHVSVT LLDLNIISGG EDESCTLEEG PELNLITCLD AGSSSDNANS SSETTTTTTT  120
NPLGNSDATE PRVFSCNYCH RKFYSSQALG GHQNAHKRER SIAKRGHRFG SQIMAFGLPL  180
LHHNNNNNNN NRFASMASLP LYHSNRGTLG IQAHSLIQKP SSSSHHHHVN GFGGSYAHHH  240
GWSRPIIDQQ PGIAKLAVPD FHHRTKSALS ASQSSVGRFE IIVNSSNTML NSAASNKEIG  300
GCVASGGTCL KTTTNQEEMK HLDLSLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.263920.0hypocotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G216800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362210.0AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549309.10.0zinc finger protein 3
RefseqXP_028208869.10.0zinc finger protein 3-like
TrEMBLA0A0B2QM640.0A0A0B2QM64_GLYSO; Zinc finger protein 3
TrEMBLI1MWY50.0I1MWY5_SOYBN; Uncharacterized protein
STRINGGLYMA17G33130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.13e-35zinc finger protein 3