PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G216800.1.p | ||||||||
Common Name | GLYMA_17G216800, LOC100820461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 329aa MW: 35633.6 Da PI: 7.2049 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Glyma.17G216800.1.p 134 FSCNYCHRKFYSSQALGGHQNAH 156 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.65E-6 | 130 | 161 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 134 | 161 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MEGLSMKEPC FCDRPTSSSI FSSSAPPPEA PPSPSTPLQH PHEKKKQLCV EELEEELENK 60 EPKKQHVSVT LLDLNIISGG EDESCTLEEG PELNLITCLD AGSSSDNANS SSETTTTTTT 120 NPLGNSDATE PRVFSCNYCH RKFYSSQALG GHQNAHKRER SIAKRGHRFG SQIMAFGLPL 180 LHHNNNNNNN NRFASMASLP LYHSNRGTLG IQAHSLIQKP SSSSHHHHVN GFGGSYAHHH 240 GWSRPIIDQQ PGIAKLAVPD FHHRTKSALS ASQSSVGRFE IIVNSSNTML NSAASNKEIG 300 GCVASGGTCL KTTTNQEEMK HLDLSLKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26392 | 0.0 | hypocotyl| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G216800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236221 | 0.0 | AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549309.1 | 0.0 | zinc finger protein 3 | ||||
Refseq | XP_028208869.1 | 0.0 | zinc finger protein 3-like | ||||
TrEMBL | A0A0B2QM64 | 0.0 | A0A0B2QM64_GLYSO; Zinc finger protein 3 | ||||
TrEMBL | I1MWY5 | 0.0 | I1MWY5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G33130.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 3e-35 | zinc finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G216800.1.p |
Entrez Gene | 100820461 |