PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G213800.1.p | ||||||||
Common Name | GLYMA_17G213800, LOC102670504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 369aa MW: 41526.2 Da PI: 5.6385 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.3e-07 | 146 | 189 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE++ ++ + + + Wk I+ + +t+ q+ s+ q+y Glyma.17G213800.1.p 146 WTIEEHKSFLFGLEIKKEKGWKQISDKYVPSKTASQVASHAQNY 189 *************************99988*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.256 | 138 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.8E-11 | 140 | 194 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 140 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-8 | 141 | 192 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.96E-4 | 146 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MSDYYFDEEE ILELLKENDW PVFDDLFNNF ATQDSSPPAD EILPANEDSS PPADDEILPA 60 HEVLDAPAPL PVPPPAPAPN RVHTSATALD PAPQMVLASQ DPTKPSEETL SSSHPHHLLQ 120 HNMDPSHVIL SGDSSHSVHH KKYEHWTIEE HKSFLFGLEI KKEKGWKQIS DKYVPSKTAS 180 QVASHAQNYV KRKNSPMKER KRRSIHDTIL EDIDIIRIDQ HNWVPPTSNF IVQPHTLGSN 240 WVPSTSNLMV QSHSTVTDQH NWIPPCAPNF AVPPRIPHVD QNNWVSPPSN LAVQSCTAHI 300 DQYTWVPPPP NFAVQPPTPH IDQHNWVPSP ANLAPHTSLI DQDNWVPTPP DFAVQPHEMQ 360 RAQHMQMQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G213800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601664.1 | 0.0 | myb-like protein J | ||||
TrEMBL | A0A0R0FQ01 | 0.0 | A0A0R0FQ01_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G45255.1 | 1e-137 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26727 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-14 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G213800.1.p |
Entrez Gene | 102670504 |