PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G173100.1.p | ||||||||
Common Name | GLYMA_17G173100, LOC100812308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 31525.9 Da PI: 9.7569 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 1.9e-08 | 163 | 203 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Glyma.17G173100.1.p 163 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 203 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-14 | 155 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-14 | 158 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-14 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-6 | 164 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.79E-6 | 177 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDVDIVKTSN NNNNMDVMAM MMQMEKFPEL LFCDDPFYTT TPTYQETDLL SSGRSSSSTT 60 SASTLFNNNV TTTIPPTTTP SNNVVQFSNI DDLFQQQPPM SQSLQLQPYP SEKKKKNNNS 120 MAAMREMIFR IAVMQPVHID PESIKPPKRR NVKISKDPQS VAARHRRERI SERIRILQRL 180 VPGGTKMDTA SMLDEAIHYV KFLKKQVQTL EQAGANRSPH SSNNNNNILN TTHVVGAVGF 240 PLGMSSNYSN NIISNVVNYS LLMKGGCQPC QVFGSTSKQL LS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.51775 | 0.0 | cotyledon| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}. | |||||
Uniprot | TISSUE SPECIFICITY: Flowers, especially in gynoecium. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17855426}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G173100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097449 | 0.0 | BT097449.1 Soybean clone JCVI-FLGm-16M5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600968.1 | 0.0 | transcription factor HEC2 | ||||
Refseq | XP_028210237.1 | 0.0 | transcription factor HEC2-like | ||||
Swissprot | Q9FHA7 | 2e-47 | HEC1_ARATH; Transcription factor HEC1 | ||||
TrEMBL | A0A0B2QGQ4 | 0.0 | A0A0B2QGQ4_GLYSO; Transcription factor HEC2 | ||||
TrEMBL | I1MVX1 | 0.0 | I1MVX1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G19830.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF651 | 34 | 141 | Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 8e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G173100.1.p |
Entrez Gene | 100812308 |