PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G156100.1.p
Common NameGLYMA_17G156100, LOC100785572
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 374aa    MW: 41496.4 Da    PI: 7.2215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G156100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13201248355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++Le A++Y+k+Lq
  Glyma.17G156100.1.p 201 QDHVIAERKRREKLSQRFIALSAIVPGL-----KKMDKATVLEDAIKYVKQLQ 248
                          6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11201248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17202258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16202258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.43E-13203252No hitNo description
SMARTSM003534.2E-15204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMQISSNMYM PEFGMEDPTL FHQYPMDSSS ALFQLEDLDF ESFSASPKNS SSHNKRLFNS  60
ESTQNSFHKS PHEQYSVAPP RPTKQNKTVM STTWSAYNAH HHHHDMVAPK ASSSSSSKII  120
SFDQHSNASS VTSQQLYNNV DAAAKVKKPK IETGYGENLD FSAAAAAASQ SICDNNSFLD  180
HYDNQDKKAA ASTTRNPTQA QDHVIAERKR REKLSQRFIA LSAIVPGLKK MDKATVLEDA  240
IKYVKQLQER VKTLEEQAVD KTVESAVFVK RSVVFAGVDS SSSDENSDQS LPEMEARISG  300
KEVLIRIHCD KNSGGAAAIL RELEKHYLTV QSSSFLPFGN NTLDITIVAK MNNDYCLTAK  360
DLIRSLSQCL RQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERKRRE
2207212RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G156100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600899.10.0transcription factor bHLH25
SwissprotQ9T0721e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLK7MLV10.0K7MLV1_SOYBN; Uncharacterized protein
STRINGGLYMA17G16741.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-54bHLH family protein