PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G143900.1.p | ||||||||
Common Name | GLYMA_17G143900, LOC100812293 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25378.1 Da PI: 5.9007 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 61 | 110 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+++Aa+a++ a++ ++g Glyma.17G143900.1.p 61 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 110 69****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.66E-21 | 61 | 119 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.024 | 61 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-31 | 61 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-12 | 61 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-36 | 61 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.65E-30 | 62 | 120 | No hit | No description |
PRINTS | PR00367 | 6.7E-10 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-10 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVMEESNPLD NEVQPTTSSS SFTITTPSTS SSSSIEEATN TTTKEKKKKR AISNIEGKHP 60 TYRGVRMRQW GKWVSEIREP RKKSRIWLGT FPTPDMAARA HDVAALTIKG SSAYLNFPEL 120 AAKLPRPAST SPKDIQAAAA KASALDFGHQ SHEAESELSQ AVSSSIQTQS SSSSSNSSLK 180 GVDDTFLDLP DLSLDLSHGA DEFHYSSAWL VAGAEHIELG FRLEEPFLWE SY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 54 | 118 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25422 | 0.0 | hypocotyl| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G143900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF551166 | 0.0 | EF551166.1 Glycine max dehydration-responsive element binding protein 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549925.1 | 1e-169 | ethylene-responsive transcription factor ERF039 | ||||
Refseq | XP_028209618.1 | 1e-169 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 2e-56 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0R0FM21 | 1e-168 | A0A0R0FM21_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445G6Q4 | 1e-168 | A0A445G6Q4_GLYSO; Ethylene-responsive transcription factor ERF034 | ||||
STRING | GLYMA17G15310.1 | 1e-169 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G143900.1.p |
Entrez Gene | 100812293 |
Publications ? help Back to Top | |||
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