PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G142300.1.p | ||||||||
Common Name | GLYMA_17G142300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 264aa MW: 29235.1 Da PI: 9.4517 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sFs+ L H++ H Glyma.17G142300.1.p 4 HKCKLCSRSFSNGRALGGHMKAH 26 79******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.04E-5 | 3 | 26 | No hit | No description |
Pfam | PF13912 | 7.5E-8 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.115 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.04E-5 | 155 | 179 | No hit | No description |
SMART | SM00355 | 160 | 160 | 180 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.004 | 160 | 179 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.52E-5 | 200 | 225 | No hit | No description |
Pfam | PF13912 | 1.6E-11 | 201 | 225 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 202 | 224 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 202 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 204 | 224 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDRHKCKLCS RSFSNGRALG GHMKAHLASL PLPLPPKLHS CFSSSDSEQE QSLRENPKKT 60 LRILDPEDRE SETESNKNPT RQRSKRNWKS TMPKLSLGHP EAEPLSSVSD TSPEEDLAMC 120 LMMLSRDTWQ EHKLANAGPP KTRCSSGSEI KLKNKVRSKH LCHACHKSFR SSRALGSHRT 180 LCSPRQEAQN NSIISNNNIK VFECPFCYKL FGSGQALGGH KRSHLIPSSS STVNHSVKLK 240 QSFIDLNLPA PAEDDDLSVV SDA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 85 | RQRSKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38714 | 0.0 | epicotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G142300.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967126 | 0.0 | KC967126.1 Glycine max C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304590.2 | 0.0 | zinc finger protein ZAT4-like | ||||
Refseq | XP_028209661.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A445G6N3 | 0.0 | A0A445G6N3_GLYSO; Zinc finger protein ZAT9 | ||||
TrEMBL | I1MV17 | 0.0 | I1MV17_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G15140.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-41 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G142300.1.p |