PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G131200.1.p
Common NameGLYMA_17G131200, LOC100777890
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 670aa    MW: 74655.7 Da    PI: 6.794
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G131200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.31.3e-1272806521373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevs 88 
                          lv+lL+ c++a+ s++ +++++++a+l +lasp+g +++ R+ ayfteALa r++r +++++++ ++++++++   +e+++al+l+++v+
  Glyma.17G131200.1.p 280 LVSLLTGCVDAIGSRNVTAINHFIAKLGDLASPKGtTSISRICAYFTEALAIRVTRLWPHVFHIAAATTSRDMVeDDESATALRLLNQVT 369
                          6899*******************************99**************************9999999887757778899999***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          Pi+kf h+t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+ l+etgerLa fAe l++pfef
  Glyma.17G131200.1.p 370 PIPKFLHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRSNPPIHVRITGIGE----SKQDLNETGERLAGFAEVLNLPFEF 455
                          *************************************************************....9************************ PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ v++rled++l++L+vk++E++aVn+v qlh++l++ +s     +++L l++s++P vvvv+eqea+hn++++ +r++++l+yysalf
  Glyma.17G131200.1.p 456 HP-VVDRLEDVRLWMLHVKEHETVAVNCVSQLHKTLHD-GSGGA-LRDFLGLIRSTKPSVVVVAEQEAEHNHTRLEARVCNSLKYYSALF 542
                          **.7********************************44.44444.689****************************************** PP

                 GRAS 269 dsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee.. 354
                          ds+ e++lp es  r+k+E++  g+ei+n++aceg+er+erhe++++Wr+++ e+ GF+ ++++e++ +q ++ll++++ + y+v+++  
  Glyma.17G131200.1.p 543 DSIeESGLPIESAVRVKIEEM-YGKEIRNIIACEGRERVERHESFGNWRRMMvEQGGFRCMSVTERELSQSQMLLKMYSCESYSVKKQek 631
                          ***9999**************.9**************************99935589**********************999***95533 PP

                 GRAS 355 ..sgslvlgWkdrpLvsvSaW 373
                               ++l W ++pL++vSaW
  Glyma.17G131200.1.p 632 egATGVTLSWLEQPLYTVSAW 652
                          3344566************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.88254629IPR005202Transcription factor GRAS
PfamPF035144.5E-125280652IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE APAQFQACHF QLPSSMSTQR LDLPSCTTAT FTRNNKDHHH  60
HQPLRPVGLS VDQKHIEAKT STCSLKQHIR LPPLAITASA TPLVEESSII NDNNNKSLKK  120
RLAAEHHDDS FAKRKKSSST TECDWFQPDV VETTTLGGFN NNNTSLVSFS SEEQERVCFL  180
PSEVVSHSAP FPLNPWLESC VTKITNFGEG SHRHPHHHHH PHHHNDHASG SVSNASSESQ  240
SLRLNDNVSE HEVGNGSGNP YYHHRKVEAG EEDDHHGFEL VSLLTGCVDA IGSRNVTAIN  300
HFIAKLGDLA SPKGTTSISR ICAYFTEALA IRVTRLWPHV FHIAAATTSR DMVEDDESAT  360
ALRLLNQVTP IPKFLHFTSN EMLLRAFEGK DRVHIIDFDI KQGLQWPSLF QSLASRSNPP  420
IHVRITGIGE SKQDLNETGE RLAGFAEVLN LPFEFHPVVD RLEDVRLWML HVKEHETVAV  480
NCVSQLHKTL HDGSGGALRD FLGLIRSTKP SVVVVAEQEA EHNHTRLEAR VCNSLKYYSA  540
LFDSIEESGL PIESAVRVKI EEMYGKEIRN IIACEGRERV ERHESFGNWR RMMVEQGGFR  600
CMSVTERELS QSQMLLKMYS CESYSVKKQE KEGATGVTLS WLEQPLYTVS AWGPVDAAAG  660
TSSSFSHPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6627165410380Protein SCARECROW
5b3h_A2e-662716549379Protein SCARECROW
5b3h_D2e-662716549379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118135KKRLAAEHHDDSFAKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.295890.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G131200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549861.10.0scarecrow-like protein 28
RefseqXP_006600806.10.0scarecrow-like protein 28
RefseqXP_006600807.10.0scarecrow-like protein 28
RefseqXP_028211243.10.0scarecrow-like protein 28
RefseqXP_028211244.10.0scarecrow-like protein 28
RefseqXP_028211245.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A445G6720.0A0A445G672_GLYSO; Scarecrow-like protein 28 isoform A
TrEMBLI1MUR10.0I1MUR1_SOYBN; Uncharacterized protein
STRINGGLYMA17G14030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein