PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G093600.2.p
Common NameGLYMA_17G093600, LOC100795252
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 355aa    MW: 39537.2 Da    PI: 8.7374
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G093600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.45.6e-241681171
              E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                         rk+ksL+ll+++fl+l+++ +   + l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  Glyma.17G093600.2.p 16 RKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRL---GV--ERRRIYDIVNVLESIGVLSRKAKNQYTWRG 81
                         79*****************999************...**..****************************98 PP
2E2F_TDP76.82.1e-24151231171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          r+eksL lltq+f+kl+ +s+ + ++l+e+ak L+ +      +++k+RR+YDi+NVL+++nliek     ++k+++rw g
  Glyma.17G093600.2.p 151 RREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDahntsVMRTKVRRLYDIANVLSSMNLIEKthtmdTRKPAFRWLG 231
                          689**************************************999**************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-261282IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-161579IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-281681IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.2E-211781IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-23148232IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.5E-31151231IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-19153231IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.02E-13153232IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MASSDPISSR HYTYNRKQKS LGLLCTNFLS LYNRDTVHLI GLDDAATRLG VERRRIYDIV  60
NVLESIGVLS RKAKNQYTWR GFAAIPLTLQ DLKEEGLKEN SNSLRGPGNH DKVSDDEDDE  120
ETQSNPAATG SQSDKLNPNS TLPKPLKNEN RREKSLALLT QNFVKLFVCS NVELISLDEA  180
AKLLLGDAHN TSVMRTKVRR LYDIANVLSS MNLIEKTHTM DTRKPAFRWL GSEGKTWDET  240
LHKSNLNDSR KRAFGSDITN ISFERNKVEL FTSGDLNPNP KKPRMENGSG LGEADENNLK  300
QGIKQASKSY EFGPFAPACV PKVGASQNNN MKQVHDWGSL ATAHSPQYQN EAEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A8e-39152233228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.205880.0flower| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Not detected during early S phase. Expressed at both the G1/S and S/G2 transitions, with a peak during G2. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:18787127}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in mitotically dividing cells. Highly expressed in young leaves and mature flowers. Lower expression in young stalk and in young and mature flowers. {ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366}.
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G093600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0952310.0BT095231.1 Soybean clone JCVI-FLGm-19A6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625312.10.0E2F transcription factor-like E2FE isoform X2
SwissprotQ8LSZ41e-110E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLA0A0R0FJT30.0A0A0R0FJT3_SOYBN; Uncharacterized protein
STRINGGLYMA17G10130.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.11e-113DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]