PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G075200.2.p
Common NameGLYMA_17G075200, LOC100801457
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 366aa    MW: 39281 Da    PI: 7.1418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G075200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12204249555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Glyma.17G075200.2.p 204 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 249
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.85E-13197253No hitNo description
SuperFamilySSF474593.93E-17197259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16201258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQPCSREMQG PNTTNSLFNN NTTCSNQPQI HFDTTSNDDF LKQMLSNLPS SSWTLDQTTP  60
DNNVVFPYDV EHANLASKFR NHQITTDNDK ASALMLHHHL LLSSSAAAAN SQLLHMPFDS  120
SAPNDVVDAP SFKSLTPNGE PASVQALYNG FSGSLQPNNQ THHFQQHPQP QGQSFGASAP  180
ANGGGSGQPK QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE  240
IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV AEGGGDCIQA KRSNSNDSLA MTEQQVAKLM  300
EEDMGSAMQY LQGKGLCLMP ISLASAISKA TCHPFINGDG PSSPRMSALT LANAVVKDAA  360
SVSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.166660.0epicotyl| leaf| pod| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00462DAPTransfer from AT4G30980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G075200.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600552.10.0transcription factor bHLH69 isoform X3
SwissprotQ8S3D51e-85BH069_ARATH; Transcription factor bHLH69
SwissprotQ9ZUG93e-85BH066_ARATH; Transcription factor bHLH66
TrEMBLI1MT340.0I1MT34_SOYBN; Uncharacterized protein
STRINGGLYMA17G08300.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-63LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]