PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G075200.1.p | ||||||||
Common Name | GLYMA_17G075200, LOC100801457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 368aa MW: 39550.3 Da PI: 7.1418 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.7e-12 | 206 | 251 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Glyma.17G075200.1.p 206 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 251 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF09806 | 7.3E-6 | 158 | 298 | IPR019187 | Cyclin-dependent kinase 2-associated protein |
CDD | cd00083 | 1.88E-13 | 199 | 255 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-17 | 199 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 203 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-9 | 206 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MQPCSREMQG PNTTNSLFNN NTTCSNQPQI HFDTTSNDDF LKQMLSNLPS SSWTLDQTTP 60 DNNVVFPYDV EHANLASKFR NHQITTDNDK ASALMLHHHL LLSSSAAAAN SQLLHMPFDS 120 SAPNDVVDAP SFKSLTPNGE PASVQALYNG FSGSLQPNNQ THHFQQHPQP QVQVQSFGAS 180 APANGGGSGQ PKQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML 240 DEIIDYVKFL QLQVKVLSMS RLGGAAAVAP LVAEGGGDCI QAKRSNSNDS LAMTEQQVAK 300 LMEEDMGSAM QYLQGKGLCL MPISLASAIS KATCHPFING DGPSSPRMSA LTLANAVVKD 360 AASVSKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 215 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.16666 | 0.0 | epicotyl| leaf| pod| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00462 | DAP | Transfer from AT4G30980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G075200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014625615.1 | 0.0 | transcription factor bHLH69 isoform X2 | ||||
Swissprot | Q8S3D5 | 1e-87 | BH069_ARATH; Transcription factor bHLH69 | ||||
TrEMBL | A0A0R0FIC8 | 0.0 | A0A0R0FIC8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G08300.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4778 | 33 | 52 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 9e-63 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G075200.1.p |
Entrez Gene | 100801457 |
Publications ? help Back to Top | |||
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