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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.17G062600.2.p |
| Common Name | GLYMA_17G062600, Glyma17g07010.1, LOC100803558 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
AP2 |
| Protein Properties |
Length: 531aa MW: 57046.3 Da PI: 8.0307 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G062600.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 46.1 | 1.3e-14 | 150 | 209 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g
Glyma.17G062600.2.p 150 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 209
57*******************666664477446**********99*************98 PP
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| 2 | AP2 | 47.2 | 5.6e-15 | 252 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
Glyma.17G062600.2.p 252 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 303
57****************988532...5************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 531 aa
Download sequence Send
to blast |
MDSSSSSPPN STNNNSLAFS LSNHFPNPSS SPLSLFHSFT YPSLSLTGSN TVDAPPEPTA 60
GAGPTNLSIF TGGPKFEDFL GGSAATATTV ACAPPQLPQF STDNNNHLYD SELKSTIAAC 120
FPRALAAEQS TEPQKPSPKK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR 180
KGRQVYLGGY DKEDKAARAY DLAALKYWGP TTTTNFPISN YEKELEEMKN MTRQEFVASL 240
RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK 300
FRGLNAVTNF DMSRYDVKSI ANSTLPIGGL SGKNKNSTDS ASESKSHEPS QSDGDPSSAS 360
SVTFASQQQP SSSNLSFAIP IKQDPSDYWS ILGYHNTPLD NSGIRNTTST VTTTTFPSSN 420
NGTASSLTPF NMEFSSAPSS TGSDNNAAFF SGGGIFVQQQ TSHGHGNASS GSSSSSLSCS 480
IPFATPIFSL NSNTSYESSA GYGNWIGPTL HTFQSHAKPS LFQTPIFGME *
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.33123 | 0.0 | cotyledon| hypocotyl| root| somatic embryo| stem| vegetative bud |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031093 | 0.0 | KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds. |
| Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
Plant J., 1999. 17(2): p. 119-30
[PMID:10074711] - El Ouakfaoui S, et al.
Control of somatic embryogenesis and embryo development by AP2 transcription factors.
Plant Mol. Biol., 2010. 74(4-5): p. 313-26
[PMID:20798978] - Molitor AM,Bu Z,Yu Y,Shen WH
Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
PLoS Genet., 2014. 10(1): p. e1004091
[PMID:24465219] - Chai C, et al.
Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
BMC Genomics, 2015. 16: p. 596
[PMID:26268547] - Feng J,Chen D,Berr A,Shen WH
ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
Plant Physiol., 2016. 172(3): p. 1746-1759
[PMID:27630184] - Santuari L, et al.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Plant Cell, 2016. 28(12): p. 2937-2951
[PMID:27920338] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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