PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G054000.1.p
Common NameGLYMA_17G054000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 420aa    MW: 47179.9 Da    PI: 6.7426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G054000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.5e-14228274354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + h + ErrRR+++N+ f+ Lr+llP+      +K +Ka+iL+ A+e ++sL
  Glyma.17G054000.1.p 228 QQHTISERRRREKLNENFQALRTLLPPG-----TKKNKATILTTATETMRSL 274
                          579***********************97.....8*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.449225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11228274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15228291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17229289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-11230279No hitNo description
SMARTSM003538.9E-12231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
IAVFMGCKNG EIELGFSNIS QVDIQTTLKN LFPQDFYIHS QSTTDQNPPL SSSSSSSSFM  60
SLSTGRPDQC SSSLLLSSIP GTSQYHFPQT LPTQTQTQTQ TSPQYQALDL VPVIPSYFPT  120
PEGEHEAIVK AFISVMSSSS TSTSQQHQPH QIVPKYTSVV HPGATAFNKC RPDTLNPNIT  180
PQLGSNFRSQ SLQKRSFEFF RNLNNLTRMR ERVTQPAPRP ISTQHQYQQH TISERRRREK  240
LNENFQALRT LLPPGTKKNK ATILTTATET MRSLMDEIEK LNMRNQQLMT VLSVKEATAT  300
STEENKAKPS SSYERLNVGV SHVSESSSSE EQMVNLQVTV RGESCLVDLL IQLLEFLERV  360
QNVNFVSMDA NNHITGETAI NQLTFRLRII EGIEWDEHAF EEAVRRVAAD TIQWQPLEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238ERRRRE
2234239RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G054000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600454.10.0putative transcription factor bHLH041
RefseqXP_028208794.10.0putative transcription factor bHLH041
TrEMBLA0A0R0F9040.0A0A0R0F904_SOYBN; Uncharacterized protein (Fragment)
STRINGGLYMA17G06190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-40bHLH family protein