PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G038800.1.p
Common NameGLYMA_17G038800, LOC100818336
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1000aa    MW: 112284 Da    PI: 7.2738
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G038800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.52.9e-54201353117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl++ ei++iL n++k++lt +++  p+ gsl+L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n
  Glyma.17G038800.1.p  20 NEaEHRWLRPAEICEILRNHKKFKLTPDPPVMPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDN 109
                          4559************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          + fqrr+yw+L+e+le+ivlvhy+e 
  Glyma.17G038800.1.p 110 EYFQRRSYWMLDEQLEHIVLVHYREI 135
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.09215141IPR005559CG-1 DNA-binding domain
SMARTSM010765.4E-7518136IPR005559CG-1 DNA-binding domain
PfamPF038598.6E-4921134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-6447537IPR013783Immunoglobulin-like fold
CDDcd006030.00133448515No hitNo description
PfamPF018336.3E-6449527IPR002909IPT domain
SuperFamilySSF812961.28E-16449534IPR014756Immunoglobulin E-set
SuperFamilySSF484035.29E-15634743IPR020683Ankyrin repeat-containing domain
CDDcd002041.30E-12637740No hitNo description
Gene3DG3DSA:1.25.40.203.4E-15641753IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.52648742IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.751681713IPR002110Ankyrin repeat
SuperFamilySSF525401.04E-8848902IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.015851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114852881IPR000048IQ motif, EF-hand binding site
PfamPF006120.0013855872IPR000048IQ motif, EF-hand binding site
SMARTSM000155.6E-4874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.725875903IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-5877896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1000 aa     Download sequence    Send to blast
MAETTKYIPN SQLELEEILN EAEHRWLRPA EICEILRNHK KFKLTPDPPV MPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVREAHEK LKAGSVDVLH CYYAHGEDNE YFQRRSYWML  120
DEQLEHIVLV HYREIKEGCK SGISHLPVVP VTLVGSSQNT SVLSSTKINS PISLVQTSFT  180
SSANKVYQNG RASEHEDVNS KNGPQASSHA QPISNYVLHS APWLTHEAAG FSELLRNPLI  240
SSWPSSFPSY SPGTGLSPWT SIQNSSRNTI NMHDGKHHVE ASEADLTVRK LSNAGLDSVH  300
RMQDGVIFRD RLITDMCVQP VIDLPTVNQV KNEHGLDSFH AQVHDHNDHP VVATTKILVE  360
QKLQDGGLYN DESEQVEYGE MKKLDSFGRW MDKEIGGDCD NSLMASDSGN YWSTLDAHSE  420
DKEVSSLRHM QLDVDSLGPS LSQEQLFSIH DFSPDWAYTG VRTKVLIVGT FLGSKKPSSE  480
TKWGCMFGEI EVSAEVLADN VIRCQTPLHS PGRVPFYITC SNRLACSEVR EFEFDENPTK  540
FLGPEGIKIS PEEEVRLQMR LLKLVDLGPD NKWLKCSVSE CEKCKLKGTM YSVRDDSGVF  600
EETFQIDGIG HINHRDILFQ RLVRDKLYEW LIYKVHEGGK GPHVLDDEGQ GVIHLAAALG  660
YVWAMAPLVA AGISPNFRDS RGRTGLHWAS YFGREETVIV LVQLGATPGA VEDPTSAFPR  720
GQTAADLGSS RGHKGIAGYL AEADLTNQLS VLTVKENETG NIATTIAANS ALQSVEDDSS  780
SMTMDEQHYL KESLAVFQKS AHAAASILAA FRARSFCQRQ LAQSSSDISE VLDVVADSLS  840
KVQNKGHFED YLHFAALKIQ KRYRGWKGRK DFLKIRDRIV KIQAHIRGHQ VRKQYKKVVW  900
SVSIVEKAIL RWRRKGAGLR GFRVGQPVGV VVKDAEKSDE YEFLSIGRRQ KSDDVKKALD  960
RVKSMVRNPE ARDQYMRLIM KYEKFKIDDG GSSQSQHVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G038800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550574.10.0calmodulin-binding transcription activator 2 isoform X1
RefseqXP_028211714.10.0calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A445G1E80.0A0A445G1E8_GLYSO; Calmodulin-binding transcription activator 1 isoform A
TrEMBLK7MJU50.0K7MJU5_SOYBN; Uncharacterized protein
STRINGGLYMA17G04310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein