PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G031400.1.p
Common NameGLYMA_17G031400, LOC102665791
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 144aa    MW: 15454.4 Da    PI: 9.8782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G031400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-053052123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC +C + F ++  L  H++ H
  Glyma.17G031400.1.p 30 FKCRYCRRQFANSQALGGHQNAH 52
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-52556IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.16E-72657No hitNo description
PROSITE profilePS5015711.6553057IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKLFGFPLKG SISTSEDIPC VVDDSGGKKF KCRYCRRQFA NSQALGGHQN AHRKERAKLA  60
QFKYLLRLQQ HDQYHHRFKE ASNGSPSVSV VGSAITSAAA GAALFEFHSA AAGSSHLGTV  120
PASGNDVVDL NLRLACSSEN FKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G031400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601397.11e-102zinc finger protein 6
RefseqXP_028210628.11e-102zinc finger protein 6-like
TrEMBLA0A445G1381e-101A0A445G138_GLYSO; Zinc finger protein 6
TrEMBLK7MJP91e-101K7MJP9_SOYBN; Uncharacterized protein
STRINGGLYMA17G03461.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.18e-14C2H2 family protein