PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G024600.1.p
Common NameGLYMA_17G024600, LOC100781646
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 1175aa    MW: 130156 Da    PI: 9.7695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G024600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-074883340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                          W +eE e +++a +++G++ Wk++a  +  +R+ +++
  Glyma.17G024600.1.p 48 QWNKEELEHFYEAYRKYGKD-WKKVALAVH-NRSVEMV 83
                         6*****************99.********9.9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-94492IPR009057Homeodomain-like
SMARTSM007170.00694593IPR001005SANT/Myb domain
PfamPF002491.8E-64883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-44883IPR009057Homeodomain-like
CDDcd001671.12E-44983No hitNo description
PfamPF065842.5E-31633733IPR033471DIRP domain
SMARTSM011358.6E-53633734IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1175 aa     Download sequence    Send to blast
MAPSRKSRSV NKRFSTVREA ASSKDKITEN ASKNRLKKRK LADMLGPQWN KEELEHFYEA  60
YRKYGKDWKK VALAVHNRSV EMVEALYTMN RAYLSLPEGT ASVVGLIAMM TDHYSVLGGS  120
DSGKESNDDA EISKKSQKRL RGKHLSDSKA LEGHFSDHSQ SHSVASGDGC LSLLKKRHSG  180
IRPHAVRKRT PRVPISYSIG KDNGDRFFSS ARQGSKQMVD TNDVAHKIAL ALTEASQRGG  240
SSKISGSPDK KFVPSLGLKS GKKHPKSEIA GANFCSSDLD DGSSELSLGS TEGNNEDYSR  300
KTIHRSGREN TGRERNQEKK IKKYGKNFET GENLNKHLND VKEASSGTDD GKNLSFIKSD  360
FVTDFADAKN ARSSYKGSRT KSKKLRLEKD EGSAFDALKT LADLSLMLPV TNPDTESSAQ  420
FKEGNHDAVD ESKMETHKVF PRIESTASSK LGKVFSDNGV AVPEAEGAHQ LNAGFRKRKQ  480
KSFNLKYDEI HTGSHLSGSQ KSKATDEVKK SIVKGKRSSV STAHSRQLKG VKSLGNLSSS  540
ANDKGEKDDS SFSLMKVSST NQGGPLNRGK PRRKMEKPKP MVQQDLVVSR NIFSSQHKKS  600
IASLQDGSYS QKGKLINCLS SYQMRRWCTL EWFYSAIDYP WFSKREFVEY LDHVGLGHVP  660
RLTRIEWGVI RSSLGRPRRF SEQFLIEEKN KLNQYRESVR SHYAEILSGT KEGLPTDLAQ  720
PLIVGQRVIA IHPKTREIHD GSVLTVDHCR YRVQFDQPEL GVEFVMDIDC MPLYPFENMP  780
TSLIQHNISS AQINQDFIEL KPNGKLKQRK VAGHTILSPS ENLDTIKNLH IPPTMHGSST  840
LSKQVFSSSS KSQPKVVCSE IGIGNAQLAS SSQPSLLDHV HSKEADILAI SELNRALDKK  900
ELVLSELKHM NDGVSESQKY GDNSVKDSEP FKRNYASVLK QLTEANEQVS SALFCLRQRN  960
TYQASSSVLS LKPMANFDDP SGQASSSNCS ACHNQESISQ SHITEIVESS RRKARMMVVQ  1020
ATQAMSNLRK TESKVERIED AINFINNQLS VDEPTASATT FLPTDSFSLA SQDQLTASVL  1080
NPLASCHVQD AELNSSSDQN EMKIPSELIS HCLATLFVIQ KCTERQFPPA DVAQVLDSAV  1140
TSLQPLSLKN LPIYGEIQKC MGIIRNQILA LIPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1569574KPRRKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.88840.0cotyledon| leaf| meristem| pod| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G024600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-112AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600340.10.0protein ALWAYS EARLY 3 isoform X2
RefseqXP_028209210.10.0protein ALWAYS EARLY 3-like isoform X3
TrEMBLA0A445G0T50.0A0A445G0T5_GLYSO; Protein ALWAYS EARLY 3 isoform A
TrEMBLK7MJL10.0K7MJL1_SOYBN; Uncharacterized protein
STRINGGLYMA17G02741.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding