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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.17G024400.3.p |
| Common Name | GLYMA_17G024400 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C3H |
| Protein Properties |
Length: 403aa MW: 42245 Da PI: 9.0627 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G024400.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.2 | 1.6e-09 | 18 | 38 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27
++f+rtG Ck+G +Ck++H++
Glyma.17G024400.3.p 18 QYFMRTGLCKFGVSCKYHHPR 38
59*****************96 PP
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| 2 | zf-CCCH | 36 | 1.2e-11 | 61 | 84 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
++C+++ +tG+Ck+G++CkF+H++
Glyma.17G024400.3.p 61 KECSYYVKTGQCKFGATCKFHHPQ 84
68********************97 PP
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| 3 | zf-CCCH | 36.5 | 8.2e-12 | 225 | 250 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G +C+++H+p
Glyma.17G024400.3.p 225 DQPECHHYMKTGECKFGLSCRYHHPP 250
689*********************97 PP
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| 4 | zf-CCCH | 31.1 | 4.1e-10 | 272 | 296 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++C ++ + G Ck+G+ CkF H++
Glyma.17G024400.3.p 272 APPCTHYTQRGVCKFGSACKFDHPM 296
689********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 11.094 | 7 | 39 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.36 | 16 | 38 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.5E-7 | 18 | 38 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.07 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-6 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.6E-5 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.8E-9 | 61 | 84 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 63 | 83 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.1E-4 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.666 | 223 | 251 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.1E-9 | 225 | 250 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-5 | 226 | 252 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-5 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.69 | 269 | 297 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-7 | 272 | 296 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.63E-6 | 273 | 299 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.5E-5 | 274 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MLVTFLMCWF YLLMVKLQYF MRTGLCKFGV SCKYHHPRQA AGTATPVPLN YYGYPLRVAE 60
KECSYYVKTG QCKFGATCKF HHPQPAGVQA LAPSPVPPVS PLPVPVPSPM YPTVQIPSGP 120
SQQQYGVLVA RPPMLPGSVV QGPYGPMVVS PAMVPFSGWS PYQAPATNPV LPSSNTSNAG 180
STQFYGISQL PSSPATFTGP YQPSGSSIGP SGASQKEHPF PERPDQPECH HYMKTGECKF 240
GLSCRYHHPP DKSAPKATVT LSPVGLPLRP GAPPCTHYTQ RGVCKFGSAC KFDHPMGSLS 300
YSPSASSLAD MPVAPYPVGS SIGTLAPSSS SSELRPELGA GSNKESVASR MSSMSTSTGS 360
VGMTLSSVGP ISHSSTQPSA QSSSSPATTS ATTSSTVSHT SS*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 1e-164 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
