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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.17G024400.2.p |
| Common Name | GLYMA_17G024400 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C3H |
| Protein Properties |
Length: 386aa MW: 40114.3 Da PI: 9.0495 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G024400.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.7 | 1.1e-09 | 1 | 21 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27
++f+rtG Ck+G +Ck++H++
Glyma.17G024400.2.p 1 MYFMRTGLCKFGVSCKYHHPR 21
59*****************96 PP
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| 2 | zf-CCCH | 36.1 | 1.1e-11 | 44 | 67 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
++C+++ +tG+Ck+G++CkF+H++
Glyma.17G024400.2.p 44 KECSYYVKTGQCKFGATCKFHHPQ 67
68********************97 PP
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| 3 | zf-CCCH | 36.6 | 7.8e-12 | 208 | 233 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G +C+++H+p
Glyma.17G024400.2.p 208 DQPECHHYMKTGECKFGLSCRYHHPP 233
689*********************97 PP
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| 4 | zf-CCCH | 31.1 | 3.9e-10 | 255 | 279 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++C ++ + G Ck+G+ CkF H++
Glyma.17G024400.2.p 255 APPCTHYTQRGVCKFGSACKFDHPM 279
689********************95 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 11.629 | 1 | 22 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.3E-7 | 1 | 21 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.2 | 1 | 21 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.07 | 40 | 68 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-6 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.6E-5 | 42 | 67 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.6E-9 | 44 | 67 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 46 | 66 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.666 | 206 | 234 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.1E-4 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.0E-9 | 208 | 233 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-5 | 209 | 235 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.69 | 252 | 280 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.2E-5 | 252 | 279 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-7 | 255 | 279 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.11E-6 | 256 | 282 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.1E-5 | 257 | 277 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MYFMRTGLCK FGVSCKYHHP RQAAGTATPV PLNYYGYPLR VAEKECSYYV KTGQCKFGAT 60
CKFHHPQPAG VQALAPSPVP PVSPLPVPVP SPMYPTVQIP SGPSQQQYGV LVARPPMLPG 120
SVVQGPYGPM VVSPAMVPFS GWSPYQAPAT NPVLPSSNTS NAGSTQFYGI SQLPSSPATF 180
TGPYQPSGSS IGPSGASQKE HPFPERPDQP ECHHYMKTGE CKFGLSCRYH HPPDKSAPKA 240
TVTLSPVGLP LRPGAPPCTH YTQRGVCKFG SACKFDHPMG SLSYSPSASS LADMPVAPYP 300
VGSSIGTLAP SSSSSELRPE LGAGSNKESV ASRMSSMSTS TGSVGMTLSS VGPISHSSTQ 360
PSAQSSSSPA TTSATTSSTV SHTSS*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 1e-164 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
