PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G024400.1.p
Common NameGLYMA_17G024400, LOC100778426
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 485aa    MW: 50800 Da    PI: 8.3659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G024400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.57.9e-124974227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C yG rC+F+H++
  Glyma.17G024400.1.p 49 DEADCIYYLRTGFCGYGTRCRFNHPR 74
                         6799********************96 PP
2zf-CCCH36.39.1e-1296120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtG Ck+G +Ck++H++
  Glyma.17G024400.1.p  96 QPVCQYFMRTGLCKFGVSCKYHHPR 120
                          689********************96 PP
3zf-CCCH35.71.5e-11143166427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C+++ +tG+Ck+G++CkF+H++
  Glyma.17G024400.1.p 143 KECSYYVKTGQCKFGATCKFHHPQ 166
                          68********************97 PP
4zf-CCCH36.21e-11307332227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +C+++H+p
  Glyma.17G024400.1.p 307 DQPECHHYMKTGECKFGLSCRYHHPP 332
                          689*********************97 PP
5zf-CCCH30.85.1e-10354378327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++C ++ + G Ck+G+ CkF H++
  Glyma.17G024400.1.p 354 APPCTHYTQRGVCKFGSACKFDHPM 378
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8544775IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-44774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-64876IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-94974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8493121IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-693120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-696121IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-996120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-598120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6140167IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5141166IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666305333IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5308334IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69351379IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7354378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5355381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5356376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT LAAGADAGLE ESSWQLGLAG AESYPMRPDE ADCIYYLRTG  60
FCGYGTRCRF NHPRDRAAVI GAAARTGGEF PERVGQPVCQ YFMRTGLCKF GVSCKYHHPR  120
QAAGTATPVP LNYYGYPLRV AEKECSYYVK TGQCKFGATC KFHHPQPAGV QALAPSPVPP  180
VSPLPVPVPS PMYPTVQIPS GPSQQQYGVL VARPPMLPGS VVQGPYGPMV VSPAMVPFSG  240
WSPYQAPATN PVLPSSNTSN AGSTQFYGIS QLPSSPATFT GPYQPSGSSI GPSGASQKEH  300
PFPERPDQPE CHHYMKTGEC KFGLSCRYHH PPDKSAPKAT VTLSPVGLPL RPGAPPCTHY  360
TQRGVCKFGS ACKFDHPMGS LSYSPSASSL ADMPVAPYPV GSSIGTLAPS SSSSELRPEL  420
GAGSNKESVA SRMSSMSTST GSVGMTLSSV GPISHSSTQP SAQSSSSPAT TSATTSSTVS  480
HTSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.331480.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G024400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-164AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550189.10.0zinc finger CCCH domain-containing protein 58
RefseqXP_028211017.10.0zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN31e-156C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A445G0U80.0A0A445G0U8_GLYSO; Zinc finger CCCH domain-containing protein 58
TrEMBLK7MJK60.0K7MJK6_SOYBN; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-146C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]