PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G201400.1.p
Common NameGLYMA_16G201400, LOC100780888
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 247aa    MW: 28268 Da    PI: 8.4948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G201400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-1274126155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ h e+Er+RR+++ + ++ Lr+llP  +   ++K s ++   +A +YIk++q
  Glyma.16G201400.1.p  74 KKMIHMEIERKRRQEMATFYASLRSLLPLEF--IKGKRSISDHMNEAANYIKHMQ 126
                          577899***********************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1372144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-973130No hitNo description
PROSITE profilePS5088812.96373125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-975126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1075145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-579131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLPLQRGNEL VIQFSNSPHH QQHKISEDLI LDDYASLNVN DSNQKFITSS SSQPTKKLFY  60
GANKKNHDSN EHKKKMIHME IERKRRQEMA TFYASLRSLL PLEFIKGKRS ISDHMNEAAN  120
YIKHMQNNIK ELGAKRDEMK KLSNHCNNME NNHAGLHTSC NFTIHENNGI MGIEITSGFR  180
EEKPKISKLL QFLTEEGFEV VSCFSTEVNG RLLHSVQCEV NNSNSVDLSE LRKKVSNAFP  240
TFRCSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.172410.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G201400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548234.10.0transcription factor bHLH118
RefseqXP_028206682.10.0transcription factor bHLH118-like
TrEMBLA0A0B2RHW10.0A0A0B2RHW1_GLYSO; Transcription factor bHLH126
TrEMBLI1MQ590.0I1MQ59_SOYBN; Uncharacterized protein
STRINGGLYMA16G32620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-39bHLH family protein