PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G179900.1.p
Common NameGLYMA_16G179900, LOC100788551
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 658aa    MW: 72353.5 Da    PI: 7.0842
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G179900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.25.4e-892896572374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++L+e+A a+ +g++  a ++L+rl+  + +      Rl+ +++ AL++r++       +     + +e   +e++ + +l+ + s ++
  Glyma.16G179900.1.p 289 KQTLMEAASAIVEGKHDVAAEILNRLNGVNRS-----DRLTDCMVSALKSRMNP-----GEHP--PPVAELFRKEHAESSQLLLDNSVCF 366
                          689***********************987654.....69**************9.....2222..222223478999999********** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          k+++++aN aIlea+ +e    +r  ++Df+i++G Q++ Ll+aL++R+++ + ++i +v++  +g +e+++++g+ L+ +Ae+l+++fe
  Glyma.16G179900.1.p 367 KVGFMAANYAILEAAFEEktenNRFCVVDFEIGKGKQYLHLLNALSARDQN-AVVKIAAVAE--NGGEERVRAVGDMLSLLAEKLRIRFE 453
                          *************876554777899***********************766.89********..77************************ PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          f++++++++++l+ e+L ++ +E+l Vn++++l +++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++Fl+r++e+l+yysal
  Glyma.16G179900.1.p 454 FKIVATQKITELTRESLGCEVDEVLMVNFAFNLNKIPDESVSTENPRDELLRRVKRLAPRVVTIVEQEINANTAPFLARVAETLSYYSAL 543
                          ***9999*********************************************************************************** PP

                 GRAS 268 fdsl.eaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgy 349
                          ++s+ +++++re+     +r+ +E+  l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++k+ l + +   + g 
  Glyma.16G179900.1.p 544 LESIeATTAGRENnnnnLDRVRLEEG-LSRKLHNSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQSMAESIKSRLTTANnrvNSGL 632
                          ****5566666665555788999999.9************************************************9998776445679* PP

                 GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                          +v+ee+g +++gW++r+L+++SaWr
  Glyma.16G179900.1.p 633 TVKEENGGICFGWMGRTLTVASAWR 657
                          ************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.372262634IPR005202Transcription factor GRAS
PfamPF035141.9E-86289657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MSSSGFPGGG GASEFFAGVG GFGGRSIPAT SMNNPNAAAS ATNNNLHPLY RTQQQQQQQQ  60
QQNLPAMFLD PSSQIAQRQT PTLIGKRTLT EFQAYNQTNN NPNHVLSNLL LRTVKPRTTF  120
SHNHMDFPVP ELQSQNLYAN QTQRFGVPLL HQLRPQPINL PNNGPVPMTG PNFGYRNSNL  180
GFPPNQNRVR VSPPVSVPVQ VQSSEPEKKI MDHRLLELEK QLLEDNDEEG EADAASVITT  240
SEWSETYQNL ISPGPVQKPV LTTTSPTSST TSSTSSSSSV ASPASGCSKQ TLMEAASAIV  300
EGKHDVAAEI LNRLNGVNRS DRLTDCMVSA LKSRMNPGEH PPPVAELFRK EHAESSQLLL  360
DNSVCFKVGF MAANYAILEA AFEEKTENNR FCVVDFEIGK GKQYLHLLNA LSARDQNAVV  420
KIAAVAENGG EERVRAVGDM LSLLAEKLRI RFEFKIVATQ KITELTRESL GCEVDEVLMV  480
NFAFNLNKIP DESVSTENPR DELLRRVKRL APRVVTIVEQ EINANTAPFL ARVAETLSYY  540
SALLESIEAT TAGRENNNNN LDRVRLEEGL SRKLHNSVAC EGRDRVERCE VFGKWRARMS  600
MAGFELKPLS QSMAESIKSR LTTANNRVNS GLTVKEENGG ICFGWMGRTL TVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2632065740375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.595030.0flower| leaf| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G179900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548164.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-151SCL8_ARATH; Scarecrow-like protein 8
TrEMBLI1MPJ50.0I1MPJ5_SOYBN; Uncharacterized protein
STRINGGLYMA16G29900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Representative plantOGRP7599918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-147SCARECROW-like 8