PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G141500.4.p

Common Name

GLYMA_16G141500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 338aa MW: 35557.9 Da PI: 5.2852

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G141500.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	78.3	9.6e-25	255	317	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++l++e++kl+se+ Glyma.16G141500.4.p 255 ERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGGENQTLREELQRLSEECEKLTSEN 317 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	4.4E-31	1	93	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	1.0E-6	119	227	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.7E-19	250	314	No hit	No description
SMART	SM00338	3.5E-23	255	319	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-22	255	317	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.518	257	320	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-11	258	314	No hit	No description
CDD	cd14702	1.63E-24	260	310	No hit	No description
PROSITE pattern	PS00036	0	262	277	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGAGEESTAK SSKSSSSAQD TPTAPAYPDW SSSMQAYYAP GATPPPFFAT TVASPTPHPY 60 LWGGQHPLMP PYGTPVPYPA IYPPGSIYAH PSMAVTPSAV QQNTEIEGKG AEGKYRDSSK 120 KLKGPSANTA SKAGESGKAG SGSGNDGISQ SGESGSEGSS NASDENTNQQ ESAANKKGSF 180 DLMLVDGANA QNNSAGAISQ SSVPGKPVVP MPATNLNIGM DLWNASSGGA EAAKMRHNQS 240 GAPGVALGDQ WVQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQKRVE SLGGENQTLR 300 EELQRLSEEC EKLTSENNSI KEELERLCGP EAVANLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	277	RRSRLRK
2	271	278	RRSRLRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28645	0.0	flower\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in both light and dark grown leaves.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G141500.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094189	0.0	BT094189.1 Soybean clone JCVI-FLGm-24N9 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001336411.1	0.0	bZIP transcription factor bZIP117 isoform 1
Refseq	XP_025981777.1	0.0	bZIP transcription factor bZIP117 isoform X2
Refseq	XP_025981778.1	0.0	bZIP transcription factor bZIP117 isoform X2
Refseq	XP_025981779.1	0.0	bZIP transcription factor bZIP117 isoform X2
Refseq	XP_028207131.1	0.0	G-box-binding factor 1-like isoform X2
Refseq	XP_028207132.1	0.0	G-box-binding factor 1-like isoform X2
Swissprot	P42774	1e-113	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A0B2SI18	0.0	A0A0B2SI18_GLYSO; G-box-binding factor 1
TrEMBL	I1MNH9	0.0	I1MNH9_SOYBN; Uncharacterized protein
STRING	GLYMA16G25600.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	3e-87	G-box binding factor 1

Link Out ? help Back to Top
Phytozome	Glyma.16G141500.4.p

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]