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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G090900.1.p | ||||||||
Common Name | GLYMA_16G090900, LOC100795938 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 390aa MW: 43687.9 Da PI: 5.2864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 2e-10 | 203 | 245 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR ++ s+f+ L+el+P++ K + a+++ A++YI++L Glyma.16G090900.1.p 203 TTERQRRVDLSSKFDALKELIPNP-----SKSDRASVVGDAINYIREL 245 57*********************9.....79***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.21E-13 | 194 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.29E-10 | 194 | 250 | No hit | No description |
PROSITE profile | PS50888 | 14.094 | 196 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-11 | 197 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-10 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-8 | 203 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MSSVWCGPKM YEESSCYDPD AMMAEGAEDC FPQMVSESEA VMSATPTQTH THNTFAYSYS 60 CGEDAANANG PIAMEHPQQN PYNYSNTQFV EELYSNQQFT YHTPTPDLLD LLHLPNPIPG 120 DNRTNVSSVS YDPYLHLNLQ QQQQPTLREL LPHMPALRND FPFGGAAGGD DIQDFGNGLV 180 DFTQQEVGKR RGGKRTKQFT STTTERQRRV DLSSKFDALK ELIPNPSKSD RASVVGDAIN 240 YIRELKRTVE ELKLLVEKKR LEKQRVMMRH KVETEGESSN LDPAEYSESL RSSWIQRKTK 300 DTEVDVRIVD NEVTIKLVQR KKIDCLVHVS HLLDQLNLDL QHVAGGHIGD FCSYLFNTKI 360 CEGSSIYASA IANKLIQVMD TSLAAASLA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G090900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-101 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548659.2 | 0.0 | transcription factor bHLH91 | ||||
Refseq | XP_014624034.1 | 0.0 | transcription factor bHLH91 | ||||
Refseq | XP_028206900.1 | 0.0 | transcription factor bHLH91-like | ||||
TrEMBL | A0A445GG64 | 0.0 | A0A445GG64_GLYSO; Transcription factor bHLH91 isoform A | ||||
TrEMBL | K7MG35 | 0.0 | K7MG35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G12132.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14498 | 8 | 11 |
Representative plant | OGRP2659 | 14 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 6e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G090900.1.p |
Entrez Gene | 100795938 |