PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G011200.1.p
Common NameGLYMA_16G011200, LOC100782874
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 371aa    MW: 40313.9 Da    PI: 10.3624
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G011200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-1576162186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +  ++ f++   + +qCk++++ ++k+yk +k+    +   ++s++p++d+le
  Glyma.16G011200.1.p  76 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVsGREDFTKapkTDIQCKNRIDTVKKKYKSEKAKIAAG---ATSKWPFYDRLE 162
                          7*************************************855555551116679*****************99986...6779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.8E-2674164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDDDDEIQSH PSPASGSPPS SPRSNGRITV TVAAPAPQAQ PPPPNSLALA LPIQQPAKGN  60
GGGGGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA EIVSGREDFT  120
KAPKTDIQCK NRIDTVKKKY KSEKAKIAAG ATSKWPFYDR LEQLIGPSAK IPGAGNSNSQ  180
PQKVPLGIPV GVRSSANQFH HPHKQPQRQQ PQSVPLKNQK IQFRRRGPPV DSDSEERDAS  240
SPASSDSFPP ESFERKRPRL MSSNTAKGSG ERRKAKGWGS AVRELTQAIL KFGEAYEQAE  300
SSKLQQVVEM EKQRMKFAKD LELQRMQFFL KTQLEISQLK LGRKGGNPSN NLNGTTNNNN  360
NNHNNNSDSE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.519940.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G011200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-165AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547826.10.0trihelix transcription factor ASIL2
RefseqXP_028206551.10.0trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-100ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A445GCW00.0A0A445GCW0_GLYSO; Trihelix transcription factor ASIL2 isoform A
TrEMBLI1MK410.0I1MK41_SOYBN; Uncharacterized protein
STRINGGLYMA16G01370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-50sequence-specific DNA binding transcription factors