PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G008200.1.p | ||||||||
Common Name | GLYMA_16G008200, LOC100810818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 544aa MW: 60153.8 Da PI: 6.123 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 241.8 | 2.9e-74 | 158 | 531 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL cA a++ g+l+++q+l l+elasp+gd+++Rlaa+ ++AL ++l++s s+ + ++++se + + l f+evsP++ Glyma.16G008200.1.p 158 EQLLNPCAAAITGGNLNRVQHLSYVLHELASPTGDANHRLAAHGLKALTQHLSSSPSSGSITFASSEPR-----FFQKTLLKFYEVSPWF 242 689***************************************************555555444544444.....33334444******** PP GRAS 92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.......skeeleetgerLakf 168 f + +aN Il+ + ++ +++Hi+D+++s+G+QWp++l+aL+ Rp ++pp +R+T+v +++s+ + +rL f Glyma.16G008200.1.p 243 SFPNNIANASILQVLGEDtdnnsRTLHILDIGVSHGMQWPTFLEALSRRPgGPPPLVRLTVVTASSSTendtpfcIGPPGDNFSSRLLGF 332 ************99876666667899************************55566*******99888888888877788999******** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..n.sesFle 255 A++++v++++n l l++l+ ++ +++p+E +V+ +++lh+l ++ ++er+e+Lk++++++Pk v+++++++ + n ++F + Glyma.16G008200.1.p 333 AQSMNVNLQINKLDNCPLHTLNAQSVDTSPDEIFVVCAQFRLHQLN---HNAPDERSEFLKVLRNMEPKGVILSDNNMGCccNcCGDFTT 419 ************9777*****************************8...66666778********************8775431469*** PP GRAS 256 rflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 +f++ +ey + ++ds+ +a +res+er+++E e+ ++++++ + +e +ekW er++eaGF ++e+a + ++llrk+ Glyma.16G008200.1.p 420 GFSRRVEYLWRFLDSTsSAFKGRESDERRVME-----GEAAKALTNQRET----NEGKEKWCERMKEAGFVGEVFGEDAIDGGRALLRKY 500 ****************4444455555555555.....5577777766555....9*********************************** PP GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +++++ve+++ s+ l Wk++++ ++S W+ Glyma.16G008200.1.p 501 DgNWEMKVEDDNTSVGLWWKGQSVSFCSLWK 531 *9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.041 | 131 | 510 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-71 | 158 | 531 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MIMEPNPTSD HSLDWFEGSV SYFPPLLDYP YDSGDIQDYQ LWEQDITSHY QTDTNTSSSP 60 NATNISTTTT PLETCDSNNN LPLSDLPKKR NATDESSPKP PQNHKHKKIK SKPINNEAYT 120 GHAEGTTTTT VRKSGGNKKG GAKANGNNCN NKDGRWAEQL LNPCAAAITG GNLNRVQHLS 180 YVLHELASPT GDANHRLAAH GLKALTQHLS SSPSSGSITF ASSEPRFFQK TLLKFYEVSP 240 WFSFPNNIAN ASILQVLGED TDNNSRTLHI LDIGVSHGMQ WPTFLEALSR RPGGPPPLVR 300 LTVVTASSST ENDTPFCIGP PGDNFSSRLL GFAQSMNVNL QINKLDNCPL HTLNAQSVDT 360 SPDEIFVVCA QFRLHQLNHN APDERSEFLK VLRNMEPKGV ILSDNNMGCC CNCCGDFTTG 420 FSRRVEYLWR FLDSTSSAFK GRESDERRVM EGEAAKALTN QRETNEGKEK WCERMKEAGF 480 VGEVFGEDAI DGGRALLRKY DGNWEMKVED DNTSVGLWWK GQSVSFCSLW KLDGNYKTST 540 FTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 3e-38 | 151 | 531 | 81 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-38 | 151 | 531 | 27 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-38 | 151 | 531 | 27 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in epidermal and cortical root cells. {ECO:0000269|PubMed:15961669}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G008200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548366.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Refseq | XP_028206083.1 | 0.0 | nodulation-signaling pathway 1 protein-like | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A445GCP0 | 0.0 | A0A445GCP0_GLYSO; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | I1MK09 | 0.0 | I1MK09_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G01020.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 | Representative plant | OGRP4082 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-150 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G008200.1.p |
Entrez Gene | 100810818 |
Publications ? help Back to Top | |||
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