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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G007400.2.p |
Common Name | GLYMA_16G007400, LOC100809762 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
AP2 |
Protein Properties |
Length: 572aa MW: 63048.9 Da PI: 6.4278 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G007400.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 37.7 | 5.2e-12 | 244 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aaka++ a++k++g
Glyma.16G007400.2.p 244 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 300
78*******************433.44555535555.779999**************98 PP
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2 | AP2 | 48.1 | 2.9e-15 | 343 | 394 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
Glyma.16G007400.2.p 343 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394
78****************988532...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 572 aa
Download sequence Send
to blast |
MSNWLGFSLT PHLRIDEEFE RENQERGGGY HHPSPSCHPH LSVMPLRSDG SLCVADSFSH 60 SAASQEWRYD SAIGGGNSNE EGPKLEDFLG CYSNSPAKVF CQDSQPDQNQ SQNNVSKINV 120 NVAPSFCTNN SEIETGDNLT NPSSLLHSFH AYNDNSHALI PTNGMYKSWL AQTQFSSDGK 180 PSNEANGCNF QSLSLTMSPS VQNGVGAISS VQVNEDSRKR VMAKSHAREP VPRKSIDTFG 240 QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDKEEKAAKA YDLAALKYWG 300 PTTHINFPLS TYEKELEEMK HMTRQEFVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR 360 IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLIAG 420 DLAKRSPKES PAPVPASDFN SCGSSPMPLV SQPPPLAITD GEHSDELSNM MWNANNSDEQ 480 AQNESGGAEF NNNVTESSSS QQVSPSSNKD ALNPQSPNEF GVSGADYGHG YFTLDGPKYD 540 DGNNENDHMS TNRLGNLGLV NQVPMFALWN E*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |