PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

AP2

Protein Properties

Length: 572aa MW: 63048.9 Da PI: 6.4278

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G007400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.7	5.2e-12	244	300	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aaka++ a++k++g Glyma.16G007400.2.p 244 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 300 78*****************433.44555535555.779999************98 PP
2	AP2	48.1	2.9e-15	343	394	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.16G007400.2.p 343 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394 78**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.95E-18	244	310	No hit	No description
SuperFamily	SSF54171	2.29E-14	244	310	IPR016177	DNA-binding domain
Pfam	PF00847	6.1E-9	244	300	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-22	245	314	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.108	245	308	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.8E-12	245	309	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-6	246	257	IPR001471	AP2/ERF domain
CDD	cd00018	4.61E-25	343	404	No hit	No description
Pfam	PF00847	5.8E-10	343	394	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-18	343	404	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.006	344	402	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-34	344	408	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-18	344	402	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-6	384	404	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MSNWLGFSLT PHLRIDEEFE RENQERGGGY HHPSPSCHPH LSVMPLRSDG SLCVADSFSH 60 SAASQEWRYD SAIGGGNSNE EGPKLEDFLG CYSNSPAKVF CQDSQPDQNQ SQNNVSKINV 120 NVAPSFCTNN SEIETGDNLT NPSSLLHSFH AYNDNSHALI PTNGMYKSWL AQTQFSSDGK 180 PSNEANGCNF QSLSLTMSPS VQNGVGAISS VQVNEDSRKR VMAKSHAREP VPRKSIDTFG 240 QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDKEEKAAKA YDLAALKYWG 300 PTTHINFPLS TYEKELEEMK HMTRQEFVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR 360 IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLIAG 420 DLAKRSPKES PAPVPASDFN SCGSSPMPLV SQPPPLAITD GEHSDELSNM MWNANNSDEQ 480 AQNESGGAEF NNNVTESSSS QQVSPSSNKD ALNPQSPNEF GVSGADYGHG YFTLDGPKYD 540 DGNNENDHMS TNRLGNLGLV NQVPMFALWN E*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MSNWLGFSLT PHLRIDEEFE RENQERGGGY HHPSPSCHPH LSVMPLRSDG SLCVADSFSH  60
SAASQEWRYD SAIGGGNSNE EGPKLEDFLG CYSNSPAKVF CQDSQPDQNQ SQNNVSKINV  120
NVAPSFCTNN SEIETGDNLT NPSSLLHSFH AYNDNSHALI PTNGMYKSWL AQTQFSSDGK  180
PSNEANGCNF QSLSLTMSPS VQNGVGAISS VQVNEDSRKR VMAKSHAREP VPRKSIDTFG  240
QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDKEEKAAKA YDLAALKYWG  300
PTTHINFPLS TYEKELEEMK HMTRQEFVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR  360
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLIAG  420
DLAKRSPKES PAPVPASDFN SCGSSPMPLV SQPPPLAITD GEHSDELSNM MWNANNSDEQ  480
AQNESGGAEF NNNVTESSSS QQVSPSSNKD ALNPQSPNEF GVSGADYGHG YFTLDGPKYD  540
DGNNENDHMS TNRLGNLGLV NQVPMFALWN E*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.56626	0.0	somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269\|PubMed:15988559}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G007400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235913	0.0	AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014624720.1	0.0	AP2-like ethylene-responsive transcription factor AIL1 isoform X2
Refseq	XP_028206125.1	0.0	AP2-like ethylene-responsive transcription factor AIL1 isoform X2
Swissprot	Q1PFE1	1e-134	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	A0A0R0FVV5	0.0	A0A0R0FVV5_SOYBN; Uncharacterized protein
STRING	GLYMA16G00950.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-117	AP2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.16G007400.2.p
Entrez Gene	100809762

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]