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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.15G273000.1.p |
Common Name | GLYMA_15G273000, LOC100788886 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
C3H |
Protein Properties |
Length: 454aa MW: 51138.1 Da PI: 5.1564 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.15G273000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 4 | 24 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25
+ C+f+ar G C Gd+C FaH
Glyma.15G273000.1.p 4 RVCKFYAR-GACLKGDQCDFAH 24
68******.************* PP
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2 | zf-CCCH | 25.4 | 2.5e-08 | 27 | 50 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k +C+++ + G C yG+rC++ H+
Glyma.15G273000.1.p 27 KDDICSYYKK-GSCAYGSRCRYKHV 50
6679**9999.*************7 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 11.695 | 1 | 24 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 2 | 26 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-7 | 3 | 25 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-5 | 25 | 49 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-6 | 27 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0041 | 27 | 51 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-5 | 28 | 49 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 64 | 121 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.39 | 125 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 2.33E-13 | 177 | 257 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.9E-10 | 181 | 252 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 4.73E-4 | 187 | 252 | No hit | No description |
PROSITE profile | PS50089 | 11.914 | 188 | 251 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 1.9E-7 | 188 | 250 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 1.2E-5 | 188 | 250 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 212 | 221 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.619 | 280 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.34 | 280 | 308 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MSNRVCKFYA RGACLKGDQC DFAHEKKDDI CSYYKKGSCA YGSRCRYKHV KASQASSSAN 60 GRHSPVLDPV VNHTIKGTSS WVPKAVKSSS SDKRARSSQQ KNLPSLENDV GQSSTSSVIP 120 SEHLFCAFAA ANCPLEDKCS RIHGNQCLYC RKFCLHPTDR KEKENHLRTC EKKEKYLQAL 180 KDSQEVECNV CLERVLSKPK PADCKFGLLP ECDHAFCLSC IRNWRNSAPT SGMDISNAGT 240 ANTVRTCPVC RKLSYFVIPS GIWYSTKEEK QEIIDNYKAN CKLIDCKHFN FGNGNCPFGA 300 SCFYKHTVKP GSYTWIHHRP PPQRRQNHFD VHDMLNMLQD VDLTSAEYFS IMRDSDLYDD 360 MDPFEMMVSD RLAGDSGPCL GPFDSDEEDL DIFQMAALSE VLASGVDDFG PEDFGDEDFN 420 PMEAALLSMM IHSNMEDEDD DDDEEEEYSD EDY*
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