PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G271900.3.p
Common NameGLYMA_15G271900, LOC100785696
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 446aa    MW: 49465.7 Da    PI: 6.2383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G271900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.4e-12373418655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L++l P +     k  s a++L +Ave+Ik+Lq
  Glyma.15G271900.3.p 373 SIAERERRTRISERIKKLQDLFPRS----EKPTSTADMLDLAVEHIKDLQ 418
                          689*********************8....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.98367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14370433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-11371422No hitNo description
Gene3DG3DSA:4.10.280.104.0E-13372431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-10373423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9373418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSVMYSPVLN YSDVEYQLWK NQDMDSSIGH PQQHCHQSNS GLLRYCSAPS SMLASLIDNT  60
IHGCVNEEPF TSENQQQQQH YLPSTSSEME TMLSKMPPSN IGWSNSEPLQ EFGGKPVKQE  120
IGQSVPQGPP KQNGYSYGGS QLIYQSQQIQ GLPNGSSIAS ISAFDGSFGA VNSMASEDSI  180
QSKMGVRNCS NLFRQKSSPA GFFSIENDLA ALREVGSFKD NDVSNGQATA STSGLHSSLT  240
FSSRSSSCLK QMPPQIAENG NESLEENYDQ SRNLVNDNGS SKCYIPSFTN EFWESSAFNA  300
PKTENEDEIM FSTSNGLESQ ETDFSYQNHG LTHHLSLPSS STKMSSIEMF LQIQGSVPYK  360
IRAKRGFATH PRSIAERERR TRISERIKKL QDLFPRSEKP TSTADMLDLA VEHIKDLQQQ  420
VQILSDRKAK CKCTRNEKHY TRTCA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.226330.0flower| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G271900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2159410.0GU215941.1 Glycine max clone BAC GmWBb_74M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546874.10.0transcription factor bHLH130 isoform X4
RefseqXP_006598252.20.0transcription factor bHLH130 isoform X2
TrEMBLI1MJM20.0I1MJM2_SOYBN; Uncharacterized protein
TrEMBLK7ME640.0K7ME64_SOYBN; Uncharacterized protein
STRINGGLYMA15G42680.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-24bHLH family protein