PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G186300.1.p | ||||||||
Common Name | GLYMA_15G186300, LOC100781603 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 452aa MW: 49726 Da PI: 6.9278 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.5 | 6.4e-29 | 201 | 258 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrC++ Cpv+k+v+r+ +d++v+++tYeg+Hnh+ Glyma.15G186300.1.p 201 DGCQWRKYGQKTAKGNPCPRAYYRCSMGtACPVRKQVQRCFKDETVLITTYEGNHNHP 258 9**************************98****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-31 | 184 | 260 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-26 | 193 | 260 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.737 | 194 | 260 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-33 | 199 | 259 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 201 | 258 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MEDKAAIKEL LEDEENPYDN TMGSTLLSLS LNNSGQPLNQ MGMLRIKLEE AKKENEILKA 60 MLNQVNQHCT ALQNRILFEM QQHQLFSSSP RNDNNNHDLQ GNKQDAEKLP MLHTRQFLNM 120 GESSSILDGN TKACAIAENA EKKMLGKNLA CDDNKYNVEG EINSQITSHE AKSTEDQVSE 180 VTCRRARVSI RARSDFSSMF DGCQWRKYGQ KTAKGNPCPR AYYRCSMGTA CPVRKQVQRC 240 FKDETVLITT YEGNHNHPLP PAARPLASST SAALNMFLSG SITSSHSSTI LPNSPLSTIS 300 PSTAVATFSQ NATCPTVTLD LTQPNNNNYL QFQSATTSSQ DHTQSFFPLP LHGNPQNYSE 360 GLMHLWSKVP IPTMLAPEKN LALVDVVSEA INKDPSLKAA LFSAISSLTG DPDQKDNINN 420 ISQLHSKSSG GYDPCSKMPA IPPIQPYTKL I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 186 | 262 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G186300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143464 | 1e-109 | BT143464.1 Lotus japonicus clone JCVI-FLLj-21J12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003546540.1 | 0.0 | WRKY transcription factor 42 | ||||
TrEMBL | I1MHN1 | 0.0 | I1MHN1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G20990.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13945 | 11 | 22 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-52 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G186300.1.p |
Entrez Gene | 100781603 |