PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.15G170500.1.p | ||||||||
Common Name | GLYMA_15G170500, LOC100807098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 539aa MW: 61001.1 Da PI: 8.1617 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.3e-11 | 352 | 396 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N+ f+ Lr llP+ +K +Ka+iL A e ++sL Glyma.15G170500.1.p 352 HMISERRRREKLNENFQALRALLPPG-----TKKDKASILIAAKETLRSL 396 8899********************97.....8***********9999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.28E-15 | 344 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.221 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.56E-10 | 349 | 400 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-14 | 351 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 352 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-10 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 539 aa Download sequence Send to blast |
MHPMESVFSL SVAARTDFIQ FLVQSLGCSY ICLWAYDSIS PNRLSFLDGI YNVRNNQASS 60 SLGSVQAQQL FSQFRTLTFD VNDDRVPGLA FRNQRPYLEL QQLELLRLAS TEIQIQFFQE 120 ARIKTAVFMG CNKGEIELGF LNMSQVDIQT ALRSLFPEDF STRVQSQQID QNPPTSSSSS 180 LRSISTGSPE YSSLIFSIPG TSQPHFPPET LGASSSRVEP TMQPVPNSPH QRAIDIQALT 240 EVPSLTQFPT PETEHDAIMR AILHVISPTT SYHHEQQHHQ NLPYSNNFLP VVRPDASAFQ 300 RYRQDLGSNM ASNFRRQSLM KRSLVFFRNM NFMRMRERVQ ATSRPTNTQL HHMISERRRR 360 EKLNENFQAL RALLPPGTKK DKASILIAAK ETLRSLMAEV DKLSNRNQGL TSLLPAKEST 420 AEETKVASLS PNERLSVRIS HVPESSTSEE RMVELQVNVR GQVSQTDLLI RLLKFLKLAH 480 HVSLVSMDAN THIAEGNNAL HQLTFRLRII QGSEWDESAF EEAVRRVVAD LAQYQMDQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 355 | 360 | ERRRRE |
2 | 356 | 361 | RRRREK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.3259 | 0.0 | epicotyl| leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.15G170500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-102 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547476.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | K7MBY3 | 0.0 | K7MBY3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G18580.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4150 | 33 | 54 | Representative plant | OGRP8581 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56960.1 | 7e-55 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.15G170500.1.p |
Entrez Gene | 100807098 |