PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G076000.1.p

Common Name

GLYMA_15G076000, LOC100801049

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 354aa MW: 38023.2 Da PI: 8.5557

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G076000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8e-39	55	115	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+r+nk+++ Glyma.15G076000.1.p 55 HPETLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRVK 115 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	57	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	58	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSANCEKMVA IPPTTNQWLQ VDDHKVLMGS NGGSSNNNKV MEKPGQNQLV QQQQHPETLK 60 CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRR NKRVKRPITS 120 PCSAAIDTAS NSSNSSSAPT AAASLQPQID TASTSNHINP LFYGLPSSSS DVNLPLFSRF 180 GSRISSSGFD LQLNNALGLG FSSGVLSNEA SDNNGYRSGF GSNNMLLSSY TSTTTTTPAM 240 SSLLLQQKFI SGGLKNDADS SNTFQHGLSL TSLEQLQIAS DHSSEAGMVA LKDVKVELGQ 300 NNNRLEWNGG AFQSQIQHVG LYDPLLYWNN SATALGVWND QAANIGSSVT SLI*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSANCEKMVA IPPTTNQWLQ VDDHKVLMGS NGGSSNNNKV MEKPGQNQLV QQQQHPETLK  60
CPRCDSSNTK FCYYNNYSLS QPRHFCKACK RYWTRGGTLR NVPVGGGCRR NKRVKRPITS  120
PCSAAIDTAS NSSNSSSAPT AAASLQPQID TASTSNHINP LFYGLPSSSS DVNLPLFSRF  180
GSRISSSGFD LQLNNALGLG FSSGVLSNEA SDNNGYRSGF GSNNMLLSSY TSTTTTTPAM  240
SSLLLQQKFI SGGLKNDADS SNTFQHGLSL TSLEQLQIAS DHSSEAGMVA LKDVKVELGQ  300
NNNRLEWNGG AFQSQIQHVG LYDPLLYWNN SATALGVWND QAANIGSSVT SLI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28672	0.0	epicotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G076000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003545993.1	0.0	dof zinc finger protein DOF1.4
Refseq	XP_028202665.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A0B2QT26	0.0	A0A0B2QT26_GLYSO; Dof zinc finger protein DOF1.4
TrEMBL	I1MEK8	0.0	I1MEK8_SOYBN; Uncharacterized protein
STRING	GLYMA15G08250.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G076000.1.p
Entrez Gene	100801049