PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G054200.1.p | ||||||||
Common Name | GLYMA_15G054200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 444aa MW: 50180 Da PI: 8.3286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.6e-05 | 340 | 362 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C +C++sF+ k+++ +H+ + H Glyma.15G054200.1.p 340 ECRKCNMSFNEKDLYLQHLLSfH 362 7******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 9.032 | 206 | 278 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 2.16E-6 | 212 | 261 | IPR016177 | DNA-binding domain |
SMART | SM00355 | 0.63 | 339 | 362 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 341 | 362 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.642 | 386 | 413 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.37 | 386 | 408 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 388 | 408 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MEASLKLESL ACIDSTTLSH SELLALSLSS LCSTHDLLTP NIDPALFNQS TGSLRQTYSL 60 PHSSPTARRR RLAGLLPSPK LPPLPAHDPE NAENRLIIDY LKQFIRDDPN FDQVELAPPS 120 LPQPRIQRKR GRNPKVKVHL DDCYRGIDIV NQNGVSVDLQ LLANSQDPFA EELKRRTEGL 180 HNEEELLGFL RDLPGQWGSR RKKRRIVDSA DFGDVLPLSW KILLGLKRKD GRAWIYCRRY 240 ISPSGQHFVS CKEVSSYLQS LLGNGDAQLQ ISRRTENVVQ EHKLSADNSA AVTKEHQDEM 300 QIVAVNMAVS GLSAANERVK EVALLGIENL ADVQIHDLLE CRKCNMSFNE KDLYLQHLLS 360 FHQRTTRRYR LGSSVGDGVI IKDGKFECQF CHKVFLERRR YNGHVGIHVR NYVRKVEDSP 420 GQPNVQGTDD KSPVREDFPF KDI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22446 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G054200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148405.1 | 0.0 | hypothetical protein PHAVU_006G205800g | ||||
TrEMBL | A0A0R0FWR2 | 0.0 | A0A0R0FWR2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G05970.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5810 | 17 | 19 | Representative plant | OGRP2035 | 7 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G054200.1.p |