PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G054200.1.p
Common NameGLYMA_15G054200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 444aa    MW: 50180 Da    PI: 8.3286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G054200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05340362223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C +C++sF+ k+++ +H+ + H
  Glyma.15G054200.1.p 340 ECRKCNMSFNEKDLYLQHLLSfH 362
                          7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.032206278IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.16E-6212261IPR016177DNA-binding domain
SMARTSM003550.63339362IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280341362IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642386413IPR007087Zinc finger, C2H2
SMARTSM003550.37386408IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEASLKLESL ACIDSTTLSH SELLALSLSS LCSTHDLLTP NIDPALFNQS TGSLRQTYSL  60
PHSSPTARRR RLAGLLPSPK LPPLPAHDPE NAENRLIIDY LKQFIRDDPN FDQVELAPPS  120
LPQPRIQRKR GRNPKVKVHL DDCYRGIDIV NQNGVSVDLQ LLANSQDPFA EELKRRTEGL  180
HNEEELLGFL RDLPGQWGSR RKKRRIVDSA DFGDVLPLSW KILLGLKRKD GRAWIYCRRY  240
ISPSGQHFVS CKEVSSYLQS LLGNGDAQLQ ISRRTENVVQ EHKLSADNSA AVTKEHQDEM  300
QIVAVNMAVS GLSAANERVK EVALLGIENL ADVQIHDLLE CRKCNMSFNE KDLYLQHLLS  360
FHQRTTRRYR LGSSVGDGVI IKDGKFECQF CHKVFLERRR YNGHVGIHVR NYVRKVEDSP  420
GQPNVQGTDD KSPVREDFPF KDI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.224460.0cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G054200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148405.10.0hypothetical protein PHAVU_006G205800g
TrEMBLA0A0R0FWR20.0A0A0R0FWR2_SOYBN; Uncharacterized protein
STRINGGLYMA15G05970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719
Representative plantOGRP203579