PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G040700.1.p

Common Name

C2H2, GLYMA_15G040700, LOC100813871

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 173aa MW: 19177.3 Da PI: 8.9783

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G040700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00048	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++Fs+ L H +H Glyma.15G040700.1.p 40 FKCKTCNRRFSSFQALGGHRASH 62 89**********99999998887 PP
2	zf-C2H2	10.6	0.0018	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H Glyma.15G040700.1.p 90 HPCPICGLEFAIGQALGGHMRKH 112 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.086	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.367	40	67	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.11E-7	40	112	No hit	No description
Pfam	PF13912	6.9E-12	40	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.29	90	112	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.5E-8	90	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MKRGREESKL DMANCLMLLT KVGESETNYP ISKGSDIGDF KCKTCNRRFS SFQALGGHRA 60 SHKKPKLMVT DLSCHQELPN PTMKQQPRMH PCPICGLEFA IGQALGGHMR KHRTAINDGL 120 LCGKPSSSLS ILKESSKDGD QKLNLRLDLN LTPLEEDDLK LNLRTPVLNC FI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.986	0.0	leaf\| pod

Function -- GeneRIF ? help Back to Top
soybean C2H2-type zinc finger gene GmZF1 enhanced cold tolerance in transgenic Arabidopsis [ZF1] [PMID: 25286048]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G040700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235404	0.0	AC235404.1 Glycine max strain Williams 82 clone GM_WBb0124F21, complete sequence.
GenBank	DQ055134	0.0	DQ055134.2 Glycine max C2H2 transcription factor (C2H2) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003547427.1	1e-124	zinc finger protein ZAT12
TrEMBL	Q4FH86	1e-123	Q4FH86_SOYBN; C2H2 transcription factor
STRING	GLYMA15G04570.1	1e-123	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-29	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G040700.1.p
Entrez Gene	100813871

Publications ? help Back to Top
Yu GH, et al. A soybean C2H2-type zinc finger gene GmZF1 enhanced cold tolerance in transgenic Arabidopsis. PLoS ONE, 2014. 9(10): p. e109399 [PMID:25286048]