PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G034500.1.p
Common NameGLYMA_15G034500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 335aa    MW: 37247.5 Da    PI: 6.1701
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G034500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-152370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l ++   +G g+W+ +ar  g+ R++k+c++rw +yl
  Glyma.15G034500.1.p 23 KGLWSPEEDDKLMNYMLNHGQGCWSDVARNAGLQRCGKSCRLRWINYL 70
                         678*******************************************97 PP
2Myb_DNA-binding50.64.5e-1676119146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+el+++ + +lG++ W+ Ia++++ gRt++++k++w++
  Glyma.15G034500.1.p  76 RGAFSPQEEELIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 119
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-241773IPR009057Homeodomain-like
PROSITE profilePS5129416.8661870IPR017930Myb domain
SuperFamilySSF466894.3E-2821117IPR009057Homeodomain-like
SMARTSM007171.1E-102272IPR001005SANT/Myb domain
PfamPF002493.5E-142370IPR001005SANT/Myb domain
CDDcd001671.85E-92670No hitNo description
PROSITE profilePS5129425.20471125IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2574125IPR009057Homeodomain-like
SMARTSM007171.8E-1575123IPR001005SANT/Myb domain
PfamPF002496.9E-1576119IPR001005SANT/Myb domain
CDDcd001672.84E-1178118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRKPEASNNN TKNNNNNSKK LRKGLWSPEE DDKLMNYMLN HGQGCWSDVA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIIHF HSLLGNRWSQ IAARLPGRTD NEIKNFWNST  120
IKKRLRNMSS TTTTTSPSPS SNASETSISE PSNKDLNMGG FISTQHNQHA GFVPMFGSSP  180
SPSIMQTGTV FNTLIDRLPM LEHGLNMPAS GGYFEGTGIP CFSQSEVNKL GSCYLENGVF  240
GRSVNIGVEG DMFVPPLENA TCSRRETTNS SYFDDDINSI LNNCNIGIGE NKAHDGVENL  300
FQQELATATA TGEWDFEELM KLDVSSFPFL DFSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28211255108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.47570.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G034500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1400962e-99BT140096.1 Lotus japonicus clone JCVI-FLLj-12H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203507.10.0transcription factor MYB46-like
TrEMBLA0A445GNS20.0A0A445GNS2_GLYSO; Transcription factor MYB46
TrEMBLI1MDB30.0I1MDB3_SOYBN; Uncharacterized protein
STRINGGLYMA15G03920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-75myb domain protein 46