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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.15G027400.10.p |
Common Name | GLYMA_15G027400 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NF-YA |
Protein Properties |
Length: 230aa MW: 25984.2 Da PI: 9.8253 |
Description |
NF-YA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.15G027400.10.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | CBFB_NFYA | 98.8 | 5.6e-31 | 109 | 165 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep+YVN+KQy++Il+RRq Rakle+ +k +k rkpylheSRh+hAl+R+Rg gGrF
Glyma.15G027400.10.p 109 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 165
69***************************9.**************************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0016602 | Cellular Component | CCAAT-binding factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MSRSLSSKVD VLPQQCHNSK TFNFQFQEQD ASSTKSTDQS YPEVGQISVQ HSSTDSTLIR 60 NEGKSMGCVI RSFMGSQDFP FPPPLLDHRP ILPVETAPVR IPLQLDFAEE PIYVNSKQYH 120 AILRRRQYRA KLEALNKPIK DRKPYLHESR HQHALKRARG AGGRFLNTKK QLQSNHTPGN 180 IAESKMHHIE NYRDGADVSY AFNSDARNMQ NDAADKGGGT TQQPLFVYM*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help
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Source |
Description |
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235312 | 1e-143 | AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence. |
GenBank | EU028314 | 1e-143 | EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence. |