PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 304aa MW: 33850.1 Da PI: 8.9224

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G017300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	170	208	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ +L +l+ + +K + a++L +A+ YI+ Lq Glyma.15G017300.2.p 170 RKEKLGDRITTLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 208 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.719	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-10	168	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-7	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-5	168	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MMVDNPNWWS MHQQPSLIPP QYVFPPSSIP FNSLTENQEP PQSWSQLFFT GLPGEEEKLG 60 PKKLENWNVQ DLNTASRVPF LDVIRQQVSQ RGNLYDHGPS WSHMVPVSSP VSCVTSFSSN 120 NILDFTYNKS DHRRNLQQDQ ISKCNSTATV GVCKKARVQP SSSQAPLKVR KEKLGDRITT 180 LHQLVSPFGK TDTASVLLEA IGYIRFLQGQ IEALSSPYLG SASKNMRNQQ SVHGERNSVP 240 EDPGQLLNDN NIGLKRKGAP NQDAEDHKAK DLKSRGLCLV PVSCTQNMHV GSYYWAPAYG 300 RGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G017300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235745	1e-109	AC235745.1 Glycine max strain Williams 82 clone GM_WBb0152I20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006597160.1	0.0	transcription factor bHLH68
Refseq	XP_028203266.1	0.0	transcription factor bHLH68-like
Swissprot	Q8S3D1	1e-58	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A445GMM1	0.0	A0A445GMM1_GLYSO; Transcription factor bHLH68 isoform A
TrEMBL	I1MCS0	0.0	I1MCS0_SOYBN; Uncharacterized protein
STRING	GLYMA15G02020.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G017300.2.p
Entrez Gene	100783401

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]