PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G017300.1.p | ||||||||
Common Name | GLYMA_15G017300, LOC100783401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 33850.1 Da PI: 8.9224 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 170 | 208 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ +L +l+ + +K + a++L +A+ YI+ Lq Glyma.15G017300.1.p 170 RKEKLGDRITTLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 208 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.719 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-10 | 168 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-7 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-5 | 168 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MMVDNPNWWS MHQQPSLIPP QYVFPPSSIP FNSLTENQEP PQSWSQLFFT GLPGEEEKLG 60 PKKLENWNVQ DLNTASRVPF LDVIRQQVSQ RGNLYDHGPS WSHMVPVSSP VSCVTSFSSN 120 NILDFTYNKS DHRRNLQQDQ ISKCNSTATV GVCKKARVQP SSSQAPLKVR KEKLGDRITT 180 LHQLVSPFGK TDTASVLLEA IGYIRFLQGQ IEALSSPYLG SASKNMRNQQ SVHGERNSVP 240 EDPGQLLNDN NIGLKRKGAP NQDAEDHKAK DLKSRGLCLV PVSCTQNMHV GSYYWAPAYG 300 RGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G017300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235745 | 1e-109 | AC235745.1 Glycine max strain Williams 82 clone GM_WBb0152I20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597160.1 | 0.0 | transcription factor bHLH68 | ||||
Refseq | XP_028203266.1 | 0.0 | transcription factor bHLH68-like | ||||
Swissprot | Q8S3D1 | 1e-58 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A445GMM1 | 0.0 | A0A445GMM1_GLYSO; Transcription factor bHLH68 isoform A | ||||
TrEMBL | I1MCS0 | 0.0 | I1MCS0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G02020.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 | Representative plant | OGRP3780 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 2e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G017300.1.p |
Entrez Gene | 100783401 |
Publications ? help Back to Top | |||
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