PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G014200.1.p

Common Name

GLYMA_15G014200, LOC100779629

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 398aa MW: 45640.5 Da PI: 4.2792

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G014200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.9	2.7e-13	167	251	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +L++a ++ + +r++l+ W++v+k + + ++er+ +qC+++++ l+k+ykk+k+ + ++ +++y+++++ Glyma.15G014200.1.p 167 WTEQETFVLLDAWGDRFLQHGRKSLRCEEWQQVAKMVsQVSKIERTDTQCRNRLDTLKKKYKKEKAKFPDS-DGGACKWVYLKRMD 251 ***********************************555789*********************995.778889****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-5	166	231	IPR009057	Homeodomain-like
Pfam	PF13837	1.4E-19	166	253	No hit	No description
PROSITE profile	PS50090	6.237	167	224	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDGIEDDARY PHNPYGYGYQ NSPYSPPVDT EYAHDDNDEN EQEQLEGDDE VDVDQSNNLQ 60 LPQEDAVDED GMYGGGDEND DNHDDDDDDD EEEEEEEEEE VEENKQIDYY AIKSEDELEW 120 HPKKQKLKSL ISTYELAPRV PAPSSVAATA PTVPKPSSGG RNSLTDWTEQ ETFVLLDAWG 180 DRFLQHGRKS LRCEEWQQVA KMVSQVSKIE RTDTQCRNRL DTLKKKYKKE KAKFPDSDGG 240 ACKWVYLKRM DELMSSPPQQ AGLSCGLDSG EYVFMNTRVH LNHANGLDEM KDNPDNTEST 300 GEEDSDGPQA KKRKKRRGSG EASSFRLLAD SIQKFSKIYE KIENSKRQQM VELEKMRKDF 360 HKELERQKRQ ILENLQCEIS KLEQRNDENN DSAENGT*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDGIEDDARY PHNPYGYGYQ NSPYSPPVDT EYAHDDNDEN EQEQLEGDDE VDVDQSNNLQ  60
LPQEDAVDED GMYGGGDEND DNHDDDDDDD EEEEEEEEEE VEENKQIDYY AIKSEDELEW  120
HPKKQKLKSL ISTYELAPRV PAPSSVAATA PTVPKPSSGG RNSLTDWTEQ ETFVLLDAWG  180
DRFLQHGRKS LRCEEWQQVA KMVSQVSKIE RTDTQCRNRL DTLKKKYKKE KAKFPDSDGG  240
ACKWVYLKRM DELMSSPPQQ AGLSCGLDSG EYVFMNTRVH LNHANGLDEM KDNPDNTEST  300
GEEDSDGPQA KKRKKRRGSG EASSFRLLAD SIQKFSKIYE KIENSKRQQM VELEKMRKDF  360
HKELERQKRQ ILENLQCEIS KLEQRNDENN DSAENGT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	314	KKRKK
2	310	316	KKRKKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.59472	0.0	seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G014200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003546941.1	0.0	trihelix transcription factor ASIL1
TrEMBL	I1MCN1	0.0	I1MCN1_SOYBN; Uncharacterized protein
STRING	GLYMA15G01730.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-64	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G014200.1.p
Entrez Gene	100779629