PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G189300.1.p
Common NameGLYMA_14G189300, LOC100778903
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 591aa    MW: 65849.9 Da    PI: 4.638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G189300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17e-53211471127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeel+++yL+ k++g++ ++  vi+e+d++k+ePwdLp  + v++++ ew+fF+++d+ky++g+r nrat++gyWkatgk
  Glyma.14G189300.1.p  21 LPLGFRFRPTDEELIDYYLRSKINGNSDDV-WVIREIDVCKWEPWDLPdlSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGK 109
                          699************************999.89**************96447777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          d++++s +++l+g+kktLvfy+grapkg++t+Wvmheyr
  Glyma.14G189300.1.p 110 DRKIKS-GSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYR 147
                          ******.99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-6114171IPR003441NAC domain
PROSITE profilePS5100556.52421171IPR003441NAC domain
PfamPF023657.5E-2822147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MGAVVECYPP PRTAVLSLNT LPLGFRFRPT DEELIDYYLR SKINGNSDDV WVIREIDVCK  60
WEPWDLPDLS VVRNKDPEWF FFCPQDRKYP NGHRLNRATN HGYWKATGKD RKIKSGSTLI  120
GMKKTLVFYT GRAPKGKRTN WVMHEYRPTL KELEGTNPGQ NPYVLCRLFK KQDESLEASN  180
GDDVERTAST PTTANYCPDE IQSDSALVPA SSSQVTEDDK PLPVISENSE EAISNIITPG  240
DIHSDECDAP DAQYQIVEPV AEEDQLLSVD IFYDPTNQQL DDKLFSPVHA HFPADFYYQA  300
NNQSELQYGT SENISEFFDS VVNWDSFSYA TSSLDLGSSF LNPKDNGSGS DSDVEMANML  360
HLQALHDYPK EAVEEKFNVG LFQNNPQMAF SNDGPMGQVH NVANYCEQPR NFDAFVNGDT  420
GIRIRTRHGR NEQPNMNMMI QSQGIAPRRI RLGVVRRPLG SQETAKDGSC ACAPEDHNSK  480
TIISAEKKAS ENHAADESST VSDESSTVTD DSDEPEEASP KSTDPRKISQ QHVATAESIS  540
GSKDLLVSRR GCYTSKVSSN CAMWSYVLAV SATVLVSAIL LVNIWAYVRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-451617512169NO APICAL MERISTEM PROTEIN
1ut4_B7e-451617512169NO APICAL MERISTEM PROTEIN
1ut7_A7e-451617512169NO APICAL MERISTEM PROTEIN
1ut7_B7e-451617512169NO APICAL MERISTEM PROTEIN
3swm_A8e-451617515172NAC domain-containing protein 19
3swm_B8e-451617515172NAC domain-containing protein 19
3swm_C8e-451617515172NAC domain-containing protein 19
3swm_D8e-451617515172NAC domain-containing protein 19
3swp_A8e-451617515172NAC domain-containing protein 19
3swp_B8e-451617515172NAC domain-containing protein 19
3swp_C8e-451617515172NAC domain-containing protein 19
3swp_D8e-451617515172NAC domain-containing protein 19
3ulx_A7e-45121747171Stress-induced transcription factor NAC1
4dul_A7e-451617512169NAC domain-containing protein 19
4dul_B7e-451617512169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532500.0leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G189300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5690450.0JX569045.1 Glycine max NAC transcription factor (NAC012) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596412.10.0protein NTM1-like 9
TrEMBLA0A0R4J5A60.0A0A0R4J5A6_SOYBN; Uncharacterized protein
STRINGGLYMA14G36840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Representative plantOGRP9409612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-98NAC transcription factor-like 9