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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.14G145700.1.p |
| Common Name | GLYMA_14G145700, LOC100800146 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
GATA |
| Protein Properties |
Length: 384aa MW: 42515.6 Da PI: 6.6743 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.14G145700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 55 | 1.1e-17 | 256 | 290 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C t kTp+WR gp g+ktLCnaCG+++++ +l
Glyma.14G145700.1.p 256 CLHCATDKTPQWRTGPMGPKTLCNACGVRFKSGRL 290
99*****************************9885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MESPNSSPIF PQFTFDTNKN NNNPDNFIVE DLLDFSNDDV VITDATFDSI TTDSSTVTTV 60
VDSCNSSSFS GSDPNTVPDV GSQNLSDGHF SGDLCVPYDD IAELEWLSNF VEESFSSEDL 120
QQMQLISGMN ARNYDVSEAR EFHYEPTTRS GPHTPEPTTK SGGLHYEPTR NSPIFNSEVS 180
VPAKARSKRS RGPPCNWASR LLVLSPTTSS SSDSEVTVPA PAEHGPAPAK KAAKAGPRKK 240
DSGSDGNGSG GDGRRCLHCA TDKTPQWRTG PMGPKTLCNA CGVRFKSGRL VPEYRPAASP 300
TFVLTKHSNS HRKVLELRRQ KEMVRAQQHH QQHHQQQQQF LHHHHHNHNH HHHQHHQNMM 360
FDVSNGDDYL IHQPVGPDFR QLI*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015036 | 9e-44 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
