PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G136500.1.p
Common NameGLYMA_14G136500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 273aa    MW: 31155.1 Da    PI: 4.5132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G136500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.21.2e-07131156630
                          HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                           ++ErrRR+r+N+ ++ Lr ++Pk +
  Glyma.14G136500.1.p 131 LMAERRRRKRLNDQLSMLRAIVPKiS 156
                          589********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.141125177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-10129190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-5131156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0019131183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-7132181No hitNo description
Gene3DG3DSA:4.10.280.101.4E-11132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSLRRETWDT NPRTEENHFF NGWSFDCFDQ NSLPYLPNSS CGQEVPQTYN NDYPFSEIYG  60
SLLDESSPQI MDSFYSTLDT PLNTAPFLGQ EDYPILSMME EEEQGLLGEE LKNLELKNRS  120
NKLQGQPSKN LMAERRRRKR LNDQLSMLRA IVPKISKVCT MQTSILGDST IDYMKELLEK  180
INNLQQEVEV DSNMASIFKD VKPNEILVRN SPKGVNTREA LGLEIQQCVI SCFNDFTMQS  240
SCSEESEQRT MLSSKDIKQA LFRSAGYGGR CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133140ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G136500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969921e-173BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228327.11e-154transcription factor bHLH93-like
SwissprotQ9LSL15e-53BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0R0GCR60.0A0A0R0GCR6_SOYBN; Uncharacterized protein
STRINGGLYMA04G09580.11e-154(Glycine max)
STRINGGLYMA14G17903.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-53beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]