PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G110900.1.p
Common NameGLYMA_14G110900, LOC100809569
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 313aa    MW: 34117 Da    PI: 7.3436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G110900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004125147123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C++ F ++  L  H++ H
  Glyma.14G110900.1.p 125 FSCNYCHRKFYSSQALGGHQNAH 147
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-6121152No hitNo description
PROSITE profilePS5015711.406125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGLSMKEPY FCDRPSSTRI FSSSDPPEAP PSPSTPLQHS HEKKKQLCVE EEEELEKEPK  60
QHVSVTLLDL NIISGEDDNS CTPEGPELNL ITCLDVGSSS NNANSSSETT TPLGGSSDHT  120
EPRVFSCNYC HRKFYSSQAL GGHQNAHKRE RSIAKRGHRF GSQIMAFGLP LLHHNNNIRF  180
ASMASLPLYH SNRGTLGIQA HSMIQKPSSS HLHVNGFGGS YAHHHGWSRP IIDQQPGIAK  240
LAAPDFHHRT KSALSSSQSS VGRFEMVNSS NTMLNSAATN NEIGGCVAIG GTRLKSTTNQ  300
EEMKHLDLSL KL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617720.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G110900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362210.0AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544597.10.0zinc finger protein 3
RefseqXP_028199166.10.0zinc finger protein 3-like
TrEMBLA0A0B2PRS50.0A0A0B2PRS5_GLYSO; Zinc finger protein 3
TrEMBLI1M9F00.0I1M9F0_SOYBN; Uncharacterized protein
STRINGGLYMA14G13360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-41C2H2 family protein