PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G066900.1.p | ||||||||
Common Name | GLYMA_14G066900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25430.4 Da PI: 5.9561 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.7e-38 | 18 | 116 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC++dCv+apyf +q + +fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lq+q+++ Glyma.14G066900.1.p 18 SCGACKFLRRKCTSDCVFAPYFSYDQaSTHFAAVHKIYGASNVSKLLSHLPIHNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVAS 107 6***********************99779************************************************************* PP DUF260 90 lkaelallk 98 l++e+++l+ Glyma.14G066900.1.p 108 LQEEIDALG 116 ****98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 19 | No hit | No description |
PROSITE profile | PS50891 | 22.479 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.5E-37 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSIKSVKNFG TTTGFGSSCG ACKFLRRKCT SDCVFAPYFS YDQASTHFAA VHKIYGASNV 60 SKLLSHLPIH NRSDAAITIS YEALARMQDP IYGCVAHIYA LQHQVASLQE EIDALGSLMA 120 NSTVSVVNCG SDQEPMTSNN GTQYNILQHD ATRTQYCQNN LANFLSQEAI SATVFKSLDS 180 QMDIELPSAH VEEPSSFGDF NSNPLEQFLS GIDQEVFVNH PWFKHNADIK N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-39 | 11 | 114 | 4 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-39 | 11 | 114 | 4 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G066900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-123 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006596617.1 | 1e-151 | LOB domain-containing protein 33 | ||||
TrEMBL | A0A445H2G4 | 1e-173 | A0A445H2G4_GLYSO; LOB domain-containing protein 33 | ||||
TrEMBL | K7M5B3 | 1e-173 | K7M5B3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G07260.2 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-56 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G066900.1.p |