PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 319aa MW: 36311 Da PI: 7.9879

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G062200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.4e-07	38	83	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e+ +++ a + + ++ +W ++a++++ g+t +++ ++ Glyma.14G062200.1.p 38 EWTREDNKKFESALAIYDNDtpdRWFKVAAMIP-GKTVFDVIKQYRE 83 7******************************.**999999875 PP
2	Myb_DNA-binding	40.3	7.1e-13	138	182	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++G+g+W+ I+r + ++t+ q+ s+ qky Glyma.14G062200.1.p 138 PWTEDEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 182 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.044	34	89	IPR017884	SANT domain
SMART	SM00717	2.2E-8	35	87	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.63E-11	37	91	IPR009057	Homeodomain-like
CDD	cd00167	5.94E-7	38	84	No hit	No description
Pfam	PF00249	4.9E-6	38	83	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.763	131	187	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-15	133	187	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-17	134	186	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.9E-10	135	181	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-10	135	185	IPR001005	SANT/Myb domain
CDD	cd00167	1.68E-8	138	182	No hit	No description
Pfam	PF00249	2.1E-10	138	182	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MIFPRFCTNL KDMELETIYP PCFMPNSNWF VQESHSTEWT REDNKKFESA LAIYDNDTPD 60 RWFKVAAMIP GKTVFDVIKQ YRELEEDVSE IEAGRVPIPG YLASSFTFEL VDNHNYDGCR 120 RRLAPVRGSD QERKKGVPWT EDEHRRFLMG LLKYGKGDWR NISRNFVVTK TPTQVASHAQ 180 KYYIRQKVSG GKDKRRPSIH DITTVNLTET SASDKNKPQL FNASPVLAPQ QKLNSISKVQ 240 LGWTSSHYND GSFMVFNPNS DALFVSSSPD VTSMALKMQG QDLYDCALHE AYAKVKVPGF 300 SMAPRDFNNE AVFGIHAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-15	39	101	11	73	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.27360	0.0	cotyledon\| epicotyl\| flower\| hypocotyl\| leaf\| root\| seed coat\| somatic embryo\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G062200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-159	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235748.1	0.0	MYB transcription factor MYB75
Refseq	XP_028201148.1	0.0	transcription factor DIVARICATA-like
Refseq	XP_028201149.1	0.0	transcription factor DIVARICATA-like
Refseq	XP_028201150.1	0.0	transcription factor DIVARICATA-like
Refseq	XP_028201151.1	0.0	transcription factor DIVARICATA-like
Refseq	XP_028201153.1	0.0	transcription factor DIVARICATA-like
Refseq	XP_028201154.1	0.0	transcription factor DIVARICATA-like
Refseq	XP_028201155.1	0.0	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-88	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0R0GGV4	0.0	A0A0R0GGV4_SOYBN; Uncharacterized protein
STRING	GLYMA14G06750.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162
Representative plant	OGRP275	17	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-92	MYB family protein

Link Out ? help Back to Top
Phytozome	Glyma.14G062200.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]