PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G058200.1.p
Common NameGLYMA_14G058200, LOC100306102
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 265aa    MW: 29005.1 Da    PI: 9.1663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G058200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-1375121354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+++E+rRRd iN  +++Lr+l+P +      K++Ka+ L  +v+++k+L
  Glyma.14G058200.1.p  75 KSHSQAEKRRRDSINAQLATLRKLIPMS-----DKMDKATLLGSVVDHVKDL 121
                          79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.98372121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1373124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.10E-1075124No hitNo description
PfamPF000108.9E-1175121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1575124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1178127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0014169234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MESYYYSGWP LAQFNSAPNS DQLSPFSVPT TTQQTLPLVA TSTSDRAAAA SLQFGEFPSW  60
PAPIAAEDRA ASASKSHSQA EKRRRDSINA QLATLRKLIP MSDKMDKATL LGSVVDHVKD  120
LKRKAMDVSK AITVPTETDE VTIDYHQAQD ESYTKKVNIL KENIIIKASV CCDDRPELFP  180
ELIQVLKGLR LTAVKADIAS VGGRIKSILV LCSKDSEENN SVCLSTLKQS LKSAVNKIAS  240
LSVATNCPTR SKRQRFFLPS HYVQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.236070.0cotyledon| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G058200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0900460.0BT090046.1 Soybean clone JCVI-FLGm-3B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544072.10.0transcription factor bHLH51
TrEMBLI1M7S20.0I1M7S2_SOYBN; Uncharacterized protein
STRINGGLYMA14G06330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-50bHLH family protein