 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.14G050000.4.p |
| Common Name | GLYMA_14G050000 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
C3H |
| Protein Properties |
Length: 319aa MW: 34665.2 Da PI: 8.4549 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.14G050000.4.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 18 | 5.1e-06 | 2 | 14 | 15 | 27 |
-TTTTT-SS-SSS CS
zf-CCCH 15 CkyGdrCkFaHgp 27
CkyG++Ck++H++
Glyma.14G050000.4.p 2 CKYGSTCKYHHPK 14
***********96 PP
|
| 2 | zf-CCCH | 38.6 | 1.8e-12 | 37 | 59 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
C++++rtG Ck+G CkF+H++
Glyma.14G050000.4.p 37 SCPYYMRTGSCKFGVACKFHHPQ 59
6********************97 PP
|
| 3 | zf-CCCH | 40.6 | 4.4e-13 | 174 | 199 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++Cr+f+ tGtCkyG+ CkF+H++
Glyma.14G050000.4.p 174 DQPECRYFMSTGTCKYGSDCKFHHPK 199
689*********************96 PP
|
| 4 | zf-CCCH | 32.5 | 1.5e-10 | 216 | 241 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C++++ +G Ck+G++CkF H+
Glyma.14G050000.4.p 216 PGQAVCSYYRIYGMCKFGPTCKFDHP 241
57899********************9 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 9.864 | 1 | 15 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-6 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.028 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-4 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.3E-10 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.2E-5 | 37 | 58 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.1E-6 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.624 | 172 | 200 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.9E-11 | 174 | 199 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.27E-7 | 175 | 201 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.7E-7 | 178 | 199 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-5 | 213 | 241 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.544 | 215 | 243 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.9E-6 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-7 | 217 | 241 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 0.001 | 220 | 240 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MCKYGSTCKY HHPKDRRGAA PVSFNTLGFP MRQEEKSCPY YMRTGSCKFG VACKFHHPQY 60
ASLGAYPLAG GPPTPTSTII PTSGLSYAGG FPAWSAVPRM SYLSGQGLQS YVPPFLPSSQ 120
GVIPVQSWNN YMGNMNPAML NGFLGSNLVY DYMNLGEPLF GGQAINSALP NRPDQPECRY 180
FMSTGTCKYG SDCKFHHPKE RISQSLINPL GLPVRPGQAV CSYYRIYGMC KFGPTCKFDH 240
PVLTIPQNYG LTSPAMNVLD TPLTRGLSNV QPPETSPSKL SSDNKLQHSD AKAATEDSSK 300
QDDTTSNSFP ASAEPLHD*
|
