PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 681aa MW: 74596.2 Da PI: 7.0435

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G016300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.4e-08	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg Glyma.14G016300.2.p 274 PCPEFRK-GTCQKGDSCEYAHG 294 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.32E-14	28	158	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.4E-15	35	163	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.5E-6	77	145	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	10	77	109	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	17.131	77	159	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.25E-10	79	154	No hit	No description
SMART	SM00248	0.0039	114	146	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.194	114	149	IPR002110	Ankyrin repeat
SMART	SM00356	2.1E-5	269	295	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.666	269	296	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.6E-5	274	295	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	274	294	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	304	327	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.869	304	328	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MCSDSKSKLS SPTLVVMENS NIQKQNLDGL YNSVLLELSA SDDYEAFKRE VEEKGLDVNE 60 AGFWYGRRIG SKKMGSETRT PLMIASLFGS AKVLNYILLQ KGGGVDVNRV CGSDRATALH 120 CAVAGGSESS LEIVKLLLDA GADAECLDAS GNKPVNLIAP AFDSLSKSRR KALEMFLRGG 180 GERDELMSQE MELQMFSVPE KKEGSDNKKE YPVDISLPDI NNGVYGTDEF RMYNFKVKPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL 300 HPAQYRTRLC KDETGCARKV CFFAHKPEEL RPVYASTGSA MPSPKSYSAS GLDMTAMSPL 360 ALSSTSLPMP TVSTPPMSPL AAASSPKSGS MWQNKINLTP PSLQLPGSRL KAALSARDLE 420 MEMELLGLES PARQQQQQQQ QLIEEIARIS SPSFRSKEFN RIVDLNPTNL DDLLASADPS 480 VFSQLHGLSV QPSTPTQSGL QMRQNMNHLR ASYPSNIPSS PVRKPSAFGF DSSAAVATAV 540 MNSRSAAFAK RSQSFIDRGA ATHHLGLSSA SNSSCRVSST LSDWSSPTGK LDWGVNGDKL 600 NKLRKSTSFG FRNSGVTASP IAQPEFGAEP DVSWVHSLVK DVPSERSEIF GAEKQQYDLS 660 KEMLPPWMEQ LYIEQEQMVA *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MCSDSKSKLS SPTLVVMENS NIQKQNLDGL YNSVLLELSA SDDYEAFKRE VEEKGLDVNE  60
AGFWYGRRIG SKKMGSETRT PLMIASLFGS AKVLNYILLQ KGGGVDVNRV CGSDRATALH  120
CAVAGGSESS LEIVKLLLDA GADAECLDAS GNKPVNLIAP AFDSLSKSRR KALEMFLRGG  180
GERDELMSQE MELQMFSVPE KKEGSDNKKE YPVDISLPDI NNGVYGTDEF RMYNFKVKPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GTCQKGDSCE YAHGVFESWL  300
HPAQYRTRLC KDETGCARKV CFFAHKPEEL RPVYASTGSA MPSPKSYSAS GLDMTAMSPL  360
ALSSTSLPMP TVSTPPMSPL AAASSPKSGS MWQNKINLTP PSLQLPGSRL KAALSARDLE  420
MEMELLGLES PARQQQQQQQ QLIEEIARIS SPSFRSKEFN RIVDLNPTNL DDLLASADPS  480
VFSQLHGLSV QPSTPTQSGL QMRQNMNHLR ASYPSNIPSS PVRKPSAFGF DSSAAVATAV  540
MNSRSAAFAK RSQSFIDRGA ATHHLGLSSA SNSSCRVSST LSDWSSPTGK LDWGVNGDKL  600
NKLRKSTSFG FRNSGVTASP IAQPEFGAEP DVSWVHSLVK DVPSERSEIF GAEKQQYDLS  660
KEMLPPWMEQ LYIEQEQMVA *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.31491	0.0	cotyledon\| flower\| hypocotyl\| leaf\| meristem\| pod\| root\| seed coat\| somatic embryo\| stem\| vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269\|PubMed:17609218}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269\|PubMed:17609218}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G016300.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress. {ECO:0000269\|PubMed:17609218}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031157	0.0	KT031157.1 Glycine max clone HN_CCL_209 C3H-type 1 Zn transcription factor (Glyma14g01990.2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003544707.1	0.0	zinc finger CCCH domain-containing protein 29
Swissprot	Q9XEE6	0.0	C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBL	I1M6J5	0.0	I1M6J5_SOYBN; C3H-type 1 Zn transcription factor
STRING	GLYMA14G01990.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein

Link Out ? help Back to Top
Phytozome	Glyma.14G016300.2.p
Entrez Gene	100783376

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]