PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G368700.1.p | ||||||||
Common Name | GLYMA_13G368700, LOC100809888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 32388.9 Da PI: 4.9521 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.8e-13 | 106 | 151 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L +P + kK +K++iL +A++Y+k+Lq Glyma.13G368700.1.p 106 HIMAERKRRQELTQKFIALSATIPGL-----KKTDKSSILGEAIDYVKQLQ 151 999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.027 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-16 | 103 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-10 | 106 | 154 | No hit | No description |
Pfam | PF00010 | 2.6E-10 | 106 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-17 | 106 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEQSWENWPL DMGMEEDRDL RDEEEFLRNI LSEPSESEMV TVGSAKRPPR TYILSFDNST 60 IIPATPEPTS RKRTRQPQNL NLEPIKPNPN TQPGKRGRSC SQTLDHIMAE RKRRQELTQK 120 FIALSATIPG LKKTDKSSIL GEAIDYVKQL QERVTELEQR NMRGKESMII LKKSEVCNSS 180 ETNSEDCCRA SEMLPDVEAR VMENEVLIEI HCEKEDGVEL KILDHLENLQ LCVTASSVLP 240 FGNSTLGITI IAQMGDAYKM KVNDLVPKLR QVLLNRMNVN TDPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 114 | ERKRRQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37236 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G368700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098534 | 1e-123 | BT098534.1 Soybean clone JCVI-FLGm-12J15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595181.1 | 0.0 | transcription factor bHLH25 | ||||
Refseq | XP_028188261.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | K7M402 | 0.0 | K7M402_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G44594.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13110 | 12 | 30 | Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G368700.1.p |
Entrez Gene | 100809888 |