PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G368500.2.p
Common NameGLYMA_13G368500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 278aa    MW: 31395.4 Da    PI: 4.66
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G368500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12100145555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + Er+RR+++ s+f  L   +P +     kK++Ka +L++A++Y+k+Lq
  Glyma.13G368500.2.p 100 HIMSERNRRQELTSKFIALAATIPGL-----KKMDKAHVLREAINYVKQLQ 145
                          8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.61595144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16100161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-10100149No hitNo description
Gene3DG3DSA:4.10.280.101.8E-15100156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-10100145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-13101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDEDVNESL RETNQFDEEF LRDILQQPEE GGEDLKNSSI MSSLFPTTYI LSFDKSAAEL  60
LPTETDHRDY SSSQLPSSSN SRANHGTNKK PRSASESLDH IMSERNRRQE LTSKFIALAA  120
TIPGLKKMDK AHVLREAINY VKQLQERIEE LEEDIRKNGV ESAITIIRSH LCIDDDSNTD  180
EECYGPNEAL PEVEARVLGK EVLIKIYCGK QKGILLKIMS QLERLHLYIS TSNVLPFGNT  240
LDITITAQMG DKYNLVVNDL VKELRQVAMM KSCDVQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.362390.0leaf| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G368500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937070.0BT093707.1 Soybean clone JCVI-FLGm-14A22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188787.10.0transcription factor bHLH18-like isoform X1
RefseqXP_028188788.10.0transcription factor bHLH18-like isoform X2
TrEMBLI1M5X60.0I1M5X6_SOYBN; Uncharacterized protein
STRINGGLYMA13G44570.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-48bHLH family protein