PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 429aa MW: 46948.9 Da PI: 6.8025

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G345200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.7e-10	230	288	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l se+ Glyma.13G345200.1.p 230 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSEN 288 9***********************************************99988888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-15	226	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.013	228	291	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.0E-9	230	288	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.85E-11	230	281	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-10	230	285	No hit	No description
CDD	cd14703	8.67E-26	231	280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MDKDKSLGLP PPSGRYSGYS PTRSVFNVKS EPSPSSSSTT SYPPLALGTT SSESSHFGHG 60 MSTDSSGFSH DISRMPDNPP RNRGHRRAHS EILTLPDDIS FDSDLGVVGA GDGPSFSDDA 120 EEDLLSMYLD MDKFNSSSAT STFQMGEPSN AVGASASTPG SGAPNYSAEN VVFGTIERPR 180 VRHQHSQSMD GSTTIKPELL VSGSEDMSAA DSKKAISAAK LAELALIDPK RAKRIWANRQ 240 SAARSKERKM RYIAELERKV QTLQTEATSL SAQLTLLQRD TNGLNSENSE LKLRLQTMEQ 300 QVHLQDALND ALKEEIQHLK ILTGQVMAPN GGPMMKLASF GGGQQFYPNN HVMHTLLAAQ 360 QFQQLQIHPQ KQQQQQHQHQ FQQFQQQHQH QHQQHQQSSD LKMRETSPTP CPKDNTSSDV 420 NPSGAKDC*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MDKDKSLGLP PPSGRYSGYS PTRSVFNVKS EPSPSSSSTT SYPPLALGTT SSESSHFGHG  60
MSTDSSGFSH DISRMPDNPP RNRGHRRAHS EILTLPDDIS FDSDLGVVGA GDGPSFSDDA  120
EEDLLSMYLD MDKFNSSSAT STFQMGEPSN AVGASASTPG SGAPNYSAEN VVFGTIERPR  180
VRHQHSQSMD GSTTIKPELL VSGSEDMSAA DSKKAISAAK LAELALIDPK RAKRIWANRQ  240
SAARSKERKM RYIAELERKV QTLQTEATSL SAQLTLLQRD TNGLNSENSE LKLRLQTMEQ  300
QVHLQDALND ALKEEIQHLK ILTGQVMAPN GGPMMKLASF GGGQQFYPNN HVMHTLLAAQ  360
QFQQLQIHPQ KQQQQQHQHQ FQQFQQQHQH QHQQHQQSSD LKMRETSPTP CPKDNTSSDV  420
NPSGAKDC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.14290	0.0	cotyledon\| meristem\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G345200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-147	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543567.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-149	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	I1M571	0.0	I1M571_SOYBN; Uncharacterized protein
STRING	GLYMA13G42030.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-149	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G345200.1.p
Entrez Gene	778194

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Liao Y, et al. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta, 2008. 228(2): p. 225-40 [PMID:18365246] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]