PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G340600.1.p
Common NameGLYMA_13G340600, LOC100801014
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 440aa    MW: 49932 Da    PI: 6.1339
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G340600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.27.1e-21108204185
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78 
                          +W ++ v++Li++++ ++++   g            +kk++W+ vsk m  +g+++sp+qC++k+++lnkryk+++++ +++t ++++++
  Glyma.13G340600.1.p 108 KWADNVVRLLITVVSCVGDDGTIGGmdghkrksgvlQKKGKWKMVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVEN 197
                          7**************777777665444445556677**********************************************85788888 PP

             trihelix  79 cpyfdql 85 
                           ++ d++
  Glyma.13G340600.1.p 198 PVLMDSM 204
                          8877777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-17106231No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSSSGLGGGI LDLESPFHRH QHTQLGQQSI TGQQHINIMS GLESDHPIGL IEVKSLNVAL  60
NFGKAKALAP SNSNELSEED EPSYAEEGNC ENLDGGNSKK GSPWQRMKWA DNVVRLLITV  120
VSCVGDDGTI GGMDGHKRKS GVLQKKGKWK MVSKIMIGKG CHVSPQQCED KFNDLNKRYK  180
RLNDILGRGT CCQVVENPVL MDSMPNLSAK MKDDVRKILS SKHLFYKEMC AYHNGQRIPN  240
SHELDLPGYS LEHGRDSRDN NGSEDEDEDN NDSEDDESDD EINTNAHEDG GRMQELCDRN  300
KLSDEDVHFG PQTSRMDKFE VEMARVFQDP TKLLREQREW IKIQMLQLQE QNISYQAQAL  360
ELEKQRLKWL RYCSKKDREL GKLRLENKRM KLENEHRILK LKQKELEADF STSEMSLDPA  420
SLGINRTQGR EHISLGRQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.293200.0meristem| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G340600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542048.10.0uncharacterized protein LOC100801014
TrEMBLI1M5120.0I1M512_SOYBN; Uncharacterized protein
STRINGGLYMA13G41550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-68sequence-specific DNA binding transcription factors