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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G340600.1.p |
| Common Name | GLYMA_13G340600, LOC100801014 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
Trihelix |
| Protein Properties |
Length: 440aa MW: 49932 Da PI: 6.1339 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G340600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 66.2 | 7.1e-21 | 108 | 204 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78
+W ++ v++Li++++ ++++ g +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++t ++++++
Glyma.13G340600.1.p 108 KWADNVVRLLITVVSCVGDDGTIGGmdghkrksgvlQKKGKWKMVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVEN 197
7**************777777665444445556677**********************************************85788888 PP
trihelix 79 cpyfdql 85
++ d++
Glyma.13G340600.1.p 198 PVLMDSM 204
8877777 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13837 | 3.9E-17 | 106 | 231 | No hit | No description |
| Sequence ? help Back to Top |
| Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MSSSGLGGGI LDLESPFHRH QHTQLGQQSI TGQQHINIMS GLESDHPIGL IEVKSLNVAL 60
NFGKAKALAP SNSNELSEED EPSYAEEGNC ENLDGGNSKK GSPWQRMKWA DNVVRLLITV 120
VSCVGDDGTI GGMDGHKRKS GVLQKKGKWK MVSKIMIGKG CHVSPQQCED KFNDLNKRYK 180
RLNDILGRGT CCQVVENPVL MDSMPNLSAK MKDDVRKILS SKHLFYKEMC AYHNGQRIPN 240
SHELDLPGYS LEHGRDSRDN NGSEDEDEDN NDSEDDESDD EINTNAHEDG GRMQELCDRN 300
KLSDEDVHFG PQTSRMDKFE VEMARVFQDP TKLLREQREW IKIQMLQLQE QNISYQAQAL 360
ELEKQRLKWL RYCSKKDREL GKLRLENKRM KLENEHRILK LKQKELEADF STSEMSLDPA 420
SLGINRTQGR EHISLGRQQ*
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G21200.1 | 1e-68 | sequence-specific DNA binding transcription factors |
